MmuINT0011169 @ mm9
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26828936-26829518:+
Coord C1 exon
chr2:26828936-26829173
Coord A exon
chr2:26829174-26829448
Coord C2 exon
chr2:26829449-26829518
Length
275 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
CTATGTCATTTGTTTTGCAGAGT
3' ss Score
9.01
Exon sequences
Seq C1 exon
AGGAAGCTCCCAAGAGTAAACACTGCCTGATGTCCCGCCCAGCCAGCAAGTGAACATTGCACACTAACCAGAATCCCAGTCACTAGGGCTCCTGTCCGGCCATCAACTGCCTTTTCTAAAGATGAGCCAGCTTTGCCTGTGGTTGACGTGCCAGCCTTGTTATGCTGTCAGTGTCAGAGGAATCCTCACTGGTGCCATCTTCATTCTGGGCTGCTGGGGGCTCTCTGACTTCCAGAAG
Seq A exon
GTGGGATCACACAAGATCTGGTGTTGGGTGTTGCAATCACTTGGGAGAGGGGATGCCAAAGCTCTTGGGTGGAGTGGGTGGAGTCTTTCTGCTTGAAGAGGAGGAAATTCGTTTACTCTGGTAACAAGACAGACTCCATTTTGTTGCAGTATGTGGACTGATCTTCCCTGCCTAGGCACTGCCCCTCATGCTCTGTCCCTATGTCTGTTGTCCTCTCTTCTCCCCCTTGCCACCTTCCTCCTTCCTTCTTCTCTTCTATGTCATTTGTTTTGCAG
Seq C2 exon
AGTCTTCTTCAAGATCTGGAGCCCAAGGATGTGTCTTCTTACTTTGGCCACCATGCTGCTCCATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-Adamts13:NM_001001322:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACACTGCCTGATGTCCCG
R:
CTGTGAATGGAGCAGCATGGT
Band lengths:
292-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: