RnoINT0013297 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5519990-5520449:+
Coord C1 exon
chr3:5519990-5520106
Coord A exon
chr3:5520107-5520379
Coord C2 exon
chr3:5520380-5520449
Length
273 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TTCTGTCAATTGTTTTACAGAGT
3' ss Score
8.57
Exon sequences
Seq C1 exon
ATGAGCCAGCTTTGCTTATGGTTGCCGTGCCAGCCTTTTCTTGCTGCCAGTATCAGAGGAATCCTCACGGGCGCCATCTTCATTCTGGGCTGCTGGGGGCTCTCTGATTTCCAGAAG
Seq A exon
GTGGGATCACATGAGATCTGGTGTCGTGGGTTGCAATCATTTGGGAGAGGGGGCTGTCAAAGCTCTTGGGTGGAGTGGGTGTGTGGTCTTTCTGCTTCCAGATAAGGAAATCCATTAACAAGACAGACTCCATTTTGTCGCAGCCCTGTGTGGACTGACCTCCTTTGCTCCCTGCCTAGGCACTGCCCCCCATTCTCTGTCCCTATATTCTCTGTTGTCCTCTCTTCTTGCCCTTGTCTCCTTCCTCCTTCTTTTCTGTCAATTGTTTTACAG
Seq C2 exon
AGTTTTCTTCAAGATCTGGAGCCCAAGGACTTATCTTCCTCCTTCAGCCGCCATACTGCTCCACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTTTGCTTATGGTTGC
R:
CTGTGAGTGGAGCAGTATGGC
Band lengths:
183-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]