HsaINT0004351 @ hg19
Intron Retention
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:19706]
Coordinates
chr1:150521898-150522371:+
Coord C1 exon
chr1:150521898-150521975
Coord A exon
chr1:150521976-150522297
Coord C2 exon
chr1:150522298-150522371
Length
322 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
GCCTCCTGCCCTCTCTCTAGGAG
3' ss Score
11.33
Exon sequences
Seq C1 exon
CCGCCGCGGAGCGAGGTTGCCTGGAGAGAGCGCCTGGGCGCAGAAGGGTTAACGGGCCACCGGGGGCTCGCAGAGCAG
Seq A exon
GTAGAGACCTCCCCGGGACCCCGGCCCCGGCCGCCCCTCTCCCGGGTCCCGTTAGACCGCCCGCCCCGCGCGCCCGCGTCGTCCCCTCTCCCTGCGCTGTGCGGTCGCGACCCCGCCACGACCCCGGACCCAGCTCCGGTGGCCTCGGACAATCTTCCAGCCCCTGGGGTCGAATTCCTGGGGAGGGAGTCTGATCCCGTGGAACTCTGGCCCCATCACCCGGGCGGGGAGTGAACCAAAATTCCTCCTAAGTCACATAGTAAAGTTGGAAAACAGACCCATGACCTCCCCGCGCGGCCGGTGCCTCCTGCCCTCTCTCTAG
Seq C2 exon
GAGGGTGCTCTCGGACGGTGTGTCCCCCACTGCACTCCTGAACTTGGAGGACAGGGTCGCCGCGAGGGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382-ADAMTSL4:NM_025008:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)