HsaINT0004353 @ hg19
Intron Retention
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:19706]
Coordinates
chr1:150529415-150529811:+
Coord C1 exon
chr1:150529415-150529526
Coord A exon
chr1:150529527-150529625
Coord C2 exon
chr1:150529626-150529811
Length
99 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
TCGCCTGCTCCCCTGCACAGAGA
3' ss Score
7.7
Exon sequences
Seq C1 exon
ATGATCTTTCAGGAGGAAAACCCAGGCGTTTTTTATCAGTATGTCATCTCTTCACCTCCTCCAATCCTTGAGAACCCCACCCCAGAGCCCCCTGTCCCCCAGCTTCAGCCGG
Seq A exon
GTAAGACTCTGACCCCTGCACTTGGAAGGAGGAGGGAGAGGCTGCAGGGCTGGCTCGGGGCAGTGGGGTGGCATCTGATTCGCCTGCTCCCCTGCACAG
Seq C2 exon
AGATTCTGAGGGTGGAGCCCCCACTTGCTCCGGCACCCCGCCCAGCCCGGACCCCAGGCACCCTCCAGCGTCAGGTGCGGATCCCCCAGATGCCCGCCCCGCCCCATCCCAGGACACCCCTGGGGTCTCCAGCTGCGTACTGGAAACGAGTGGGACACTCTGCATGCTCAGCGTCCTGCGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382-ADAMTSL4:NM_025008:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(13.8=42.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTCCCCCAGCTTCAG
R:
CCACTCGTTTCCAGTACGCAG
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)