RnoINT0013668 @ rn6
Intron Retention
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197807781-197808168:-
Coord C1 exon
chr2:197808066-197808168
Coord A exon
chr2:197807967-197808065
Coord C2 exon
chr2:197807781-197807966
Length
99 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
GCTCCTGGACTTCCCTGCAGAGA
3' ss Score
6.97
Exon sequences
Seq C1 exon
ATGATCTTTCAAGAGGACAACCCAGGTGTCTTCTATCAGTATGTCACCTCTGCAGCCCCAGAGAGCCCTTCCACAATGCCTCCAGCCCTTCAGCTTCAGCCTG
Seq A exon
GTAAAACAAGATCCCCAGACCCAGAAGAGGAGGGTGACGCAGAGATGGGCTCCAGGGTAGCAGGGAGGCATCTAATCTGGCTCCTGGACTTCCCTGCAG
Seq C2 exon
AGATGCTGAGGGGGGAGCCCTTACTCCCTTCAGCCCCCCGCCCAGTTCGGGCACCAGGCACCCTCCAGCGTCAGGCACGGATTCCCCAAGTGCCTCCTCCGACTCATGTCAGGACGGCCATGGGATCTTCGGCTGGGTACTGGAAGCAGGTGGGGCACTCTGAATGTTCAGCATCCTGTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385:ENSRNOT00000074156:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(13.8=45.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTATGTCACCTCTGCAGCC
R:
ATGAGTCGGAGGAGGCACTTG
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]