HsaINT0004372 @ hg38
Intron Retention
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr19:1507557-1508109:-
Coord C1 exon
chr19:1507998-1508109
Coord A exon
chr19:1507644-1507997
Coord C2 exon
chr19:1507557-1507643
Length
354 bp
Sequences
Splice sites
5' ss Seq
CCGGTGACT
5' ss Score
4.54
3' ss Seq
CCTCCTACCCTCCCACCCAGGTG
3' ss Score
9.12
Exon sequences
Seq C1 exon
AGCGCCGGCTGTGATGGGTTGTTGGGCTCGGGTGCCCTCGAGGACCGCTGTGGCCGCTGCGGAGGCGCCAACGACTCGTGCCTTTTCGTGCAGCGCGTGTTTCGTGACGCCG
Seq A exon
GTGACTACCTGCCCCGCCCTCCCTGCACACACGTCAGAGTGGGCCCTTTAACGAGCCGTGGCCCGGAAGCAAATTTCCGTGCTGATTGGCCAGTGTGCGGCCCAGCCCCCCTTTCTCCTCATCCTGATTGGCTACTGACAGATTGTCCCGCCCTTCCCCAGGACAGATGGGGTTTTAACCCTTTCCCTGCCACACTGAAGCAATAGTAATTGTAACTCCAAACGTTTACGGAGGGTTTTCCGGTTCCCAGGACCCTGGCTAGCTGTCTTACCCGCAGTAGCTCATTAAATCCTCAAGTCATCGCTCAAATACACCCCCACTGGCACCCCAACACCCTCCTACCCTCCCACCCAG
Seq C2 exon
GTGCCTTCGCTGGGTACTGGAACGTGACCCTGATCCCCGAGGGCGCCAGACACATCCGCGTGGAACACAGGAGCCGCAACCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761:ENST00000330475:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(8.2=23.7)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGATGGGTTGTTGGGCTC
R:
CAGGTGGTTGCGGCTCCT
Band lengths:
190-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development