GgaINT1005548 @ galGal4
Intron Retention
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3130285-3130897:-
Coord C1 exon
chr28:3130774-3130897
Coord A exon
chr28:3130369-3130773
Coord C2 exon
chr28:3130285-3130368
Length
405 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAAT
5' ss Score
4.89
3' ss Seq
GACTCCCTGCCCACCTCCAGGTC
3' ss Score
8.81
Exon sequences
Seq C1 exon
AGCGTTGGCTGTGATGGGATCCTGGGCACGGGAGCACAGCCCCGTGTCTGCAGCCGGTGCGGCGGTGGGCAGGATGGGTGCCTCTTTGTGCACCGGCTCTTCCAGGACACGGAGCCCTTCTCCG
Seq A exon
GTGAATGAACATTGCCCCGGCCCCTCCATGGGTGAATGCTTTGGCTCTTGGCTTCCCTGTTCTATTGCCCTCTGCCCGCGTTCCCTGCAACCCCCCATCACCTCTGGGGTGCTGCTATGATCTGGTGGTCCCCGGGGCTGTTCAGGGCTCTCCAGGATGCACCCAGGGCGGTCCACGTCCCCTGTTGGGGTCCTGGCTGTGGTGTGGGAATGCAGATGGCCACGCATGACCTGCATGTCCCACTGCATGGGGTCGGGCGGGGTCGATGCCATGGGGGTCCCCCACTGCCCACCTCCCCCCACCCACCTCTCCTCACTCACCCTGTGGGTGTCCCAGCTCTGGCCCTGCTGTCCCCATGATAACCCCTCGGGCCGCATTCCGCCCTGACTCCCTGCCCACCTCCAG
Seq C2 exon
GTCATTTTGGGTACATGAATGTGACCAAGATTCCCGCTGGGGCCACCAACATCAAGGTGACGGACAAGAGCCGCAACTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298:ENSGALT00000041053:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(9.9=26.2)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGGCTGTGATGGGATCC
R:
CAAGAAAGTTGCGGCTCTTGT
Band lengths:
206-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]