GgaEX1006472 @ galGal4
Exon Skipping
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3130285-3131296:-
Coord C1 exon
chr28:3131188-3131296
Coord A exon
chr28:3130977-3131104
Coord C2 exon
chr28:3130285-3130368
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCTCTGGCTCTGCAGCCC
3' ss Score
9.43
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GGCTGCCCTGGCGGCTCAGTGCCGTTCCGTGCCATGCAGTGCTCCCTATACGACGACACACCCGTGCAGGGCATGCAGACCCGGCACCGCTGGGTGCCCTTCTATGGAG
Seq A exon
CCCCCAACGTCTGTGACCTCAACTGCTTGGCTGTGGGGCACAACTTCTACTACACCTTTGGCCGCGTGTTGGACGGCACCCGCTGCAGGCCCGGCTCCACGGATCTGTGCGTCGGTGGGCGCTGCCTG
Seq C2 exon
GTCATTTTGGGTACATGAATGTGACCAAGATTCCCGCTGGGGCCACCAACATCAAGGTGACGGACAAGAGCCGCAACTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298_MULTIEX1-3/5=2-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NO
C2:
PF059869=ADAM_spacer1=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTGCCGTTCCGTG
R:
AGAAAGTTGCGGCTCTTGTCC
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]