DreEX6007271 @ danRer10
Exon Skipping
Gene
ENSDARG00000052118 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr7:50213431-50228290:-
Coord C1 exon
chr7:50228185-50228290
Coord A exon
chr7:50227943-50228070
Coord C2 exon
chr7:50213431-50213554
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGATTTATGCGACTTTCAGGCT
3' ss Score
5.39
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GAGTGTCCTGCTGACTCTATGGACTTCAGAGAGCTGCAGTGTAAAGCGTTCAATGACAGACCCCTGGTCGCTGGCAGCAGTTTCCACTGGACTACCTTTCACGGCG
Seq A exon
GCTCTGACCCGTGTGAGCTCAGCTGTCTGGCTATTGGACACAACTTCTACTACAACTTTGGAAGGGTGCTTGATGGGACACCATGCCAATCAGATCAGGGGACAGTCTGTGTGAATGGGAAGTGTCTG
Seq C2 exon
AAGCCAGGATGTGACTTGATCTTTGGATCGCAGCAGCAGGAGGACGCCTGCATGGTGTGTGGAGGCCACAACTCAACCTGCCTTCATCACAGAAGCGTTTATCAAAGCAACGGCCAGAACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052118-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.8)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(9.1=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCCTGCTGACTCTATGGA
R:
TGTTCTGGCCGTTGCTTTGAT
Band lengths:
226-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]