MmuEX6049827 @ mm10
Exon Skipping
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80342307-80344941:-
Coord C1 exon
chr10:80344833-80344941
Coord A exon
chr10:80343599-80343726
Coord C2 exon
chr10:80342307-80343020
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACCACCCCTCCCGCCCTCAGCGC
3' ss Score
9.89
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GACTGCCCTCCAGGGACCACACCATTCCGAGACCTGCAGTGTTCTCTCTACAATGGCCACCCTGTCCTGGACACCCAGAAAACCTACCAGTGGGTGCCCTTCCACGGGG
Seq A exon
CGCCCAATGTGTGTGACCTCAACTGCCTAGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGTACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
Seq C2 exon
AGCGCAGGCTGTGACGGGATACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGCGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCGGTGACTGTCCCATTCTGACTCACCACCAGCGCTTGAGAAACACAGTGGAGAGGGGTGTCCCTTTAACAAGTTTGGCTCCTGGGAGCCAAGGCTCTTGTTGATTGGGCTTCCCCTGATTGGCCTCTGACAGAGCGTCCCACCCTCCCTCGAATAGATGCGCTTTTAACCCCTTTCCTGCCTCCCCTCAGTATCATCTCATTTATCCGCAGCTATCGGTCCCTGAGCACAGTATCGCACCCAAAGTGTACCTTGCCGCTGCGAGCCCCAGAGCATCCCTCCCCTGCGCACCCCAGAGCGTCCCTCGCCTGTGTACCCCAGAGCATCCCTCCCCTGCGCAACCCAGAGCGTCCCTCGCCTGTGTACCCCAGAGTATCCCTGCTCTGCGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-'19-19,'19-17,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NO
C2:
PF059869=ADAM_spacer1=FE(26.4=100)
Main Skipping Isoform:
ENSMUST00000095446fB5423
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGAGACCTGCAGTGTTCT
R:
ACACCCCTCTCCACTGTGTTT
Band lengths:
255-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types