HsaEX0002610 @ hg38
Exon Skipping
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr19:1507998-1510258:-
Coord C1 exon
chr19:1510150-1510258
Coord A exon
chr19:1508443-1508570
Coord C2 exon
chr19:1507998-1508109
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCGACTCCTCCTGCCCTCAGCGC
3' ss Score
8.97
5' ss Seq
CTTGTAAGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GACTGCCCCCCAGGGGCTGTGCCCTTCCGAGACCTACAGTGTGCCCTGTACAATGGCCGCCCTGTCCTGGGCACCCAGAAGACCTACCAGTGGGTGCCCTTCCATGGGG
Seq A exon
CGCCCAACCAGTGCGACCTCAACTGCCTGGCTGAGGGGCACGCCTTCTACCACAGCTTCGGCCGCGTCCTGGACGGCACCGCCTGCAGCCCGGGTGCCCAGGGGGTCTGCGTGGCTGGCCGCTGCCTT
Seq C2 exon
AGCGCCGGCTGTGATGGGTTGTTGGGCTCGGGTGCCCTCGAGGACCGCTGTGGCCGCTGCGGAGGCGCCAACGACTCGTGCCTTTTCGTGCAGCGCGTGTTTCGTGACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(8.2=23.7)
Main Skipping Isoform:
ENST00000330475fB185
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCCTTCCGAGACCTA
R:
CGTCACGAAACACGCGCT
Band lengths:
202-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development