MmuEX6049827 @ mm9
Exon Skipping
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:79805052-79807686:-
Coord C1 exon
chr10:79807578-79807686
Coord A exon
chr10:79806344-79806471
Coord C2 exon
chr10:79805052-79805765
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACCACCCCTCCCGCCCTCAGCGC
3' ss Score
9.89
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GACTGCCCTCCAGGGACCACACCATTCCGAGACCTGCAGTGTTCTCTCTACAATGGCCACCCTGTCCTGGACACCCAGAAAACCTACCAGTGGGTGCCCTTCCACGGGG
Seq A exon
CGCCCAATGTGTGTGACCTCAACTGCCTAGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGTACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
Seq C2 exon
AGCGCAGGCTGTGACGGGATACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGCGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCGGTGACTGTCCCATTCTGACTCACCACCAGCGCTTGAGAAACACAGTGGAGAGGGGTGTCCCTTTAACAAGTTTGGCTCCTGGGAGCCAAGGCTCTTGTTGATTGGGCTTCCCCTGATTGGCCTCTGACAGAGCGTCCCACCCTCCCTCGAATAGATGCGCTTTTAACCCCTTTCCTGCCTCCCCTCAGTATCATCTCATTTATCCGCAGCTATCGGTCCCTGAGCACAGTATCGCACCCAAAGTGTACCTTGCCGCTGCGAGCCCCAGAGCATCCCTCCCCTGCGCACCCCAGAGCGTCCCTCGCCTGTGTACCCCAGAGCATCCCTCCCCTGCGCAACCCAGAGCGTCCCTCGCCTGTGTACCCCAGAGTATCCCTGCTCTGCGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-'7-14,'7-12,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NO
C2:
PF059869=ADAM_spacer1=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGAGACCTGCAGTGTTCT
R:
ACACCCCTCTCCACTGTGTTT
Band lengths:
255-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: