GgaEX1006472 @ galGal3
Exon Skipping
Gene
ENSGALG00000024298 | ADAMTSL5
Description
NA
Coordinates
chr28:2569369-2569868:-
Coord C1 exon
chr28:2569760-2569868
Coord A exon
chr28:2569549-2569676
Coord C2 exon
chr28:2569369-2569469
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCTCTGGCTCTGCAGCCC
3' ss Score
9.43
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GGCTGCCCTGGCGGCTCAGTGCCGTTCCGTGCCATGCAGTGCTCCCTATACGACGACACACCCGTGCAGGGCATGCAGACCCGGCACCGCTGGGTGCCCTTCTATGGAG
Seq A exon
CCCCCAACGTCTGTGACCTCAACTGCTTGGCTGTGGGGCACAACTTCTACTACACCTTTGGCCGCGTGTTGGACGGCACCCGCTGCAGGCCCGGCTCCACGGATCTGTGCGTCGGTGGGCGCTGCCTG
Seq C2 exon
AGCGTTGGCTGTGATGGGATGCTGGGCACGGGAGCACAGCCCCGTGTCTGCAGCCGGTGCGGCGGTTGGCAGGATGGGTGCCTCTTTGTGCCCCGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTGCCGTTCCGTGC
R:
CAGAGCCGGGGCACAAAG
Band lengths:
196-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]