RnoEX0006945 @ rn6
Exon Skipping
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12232321-12234576:+
Coord C1 exon
chr7:12232321-12232429
Coord A exon
chr7:12233596-12233723
Coord C2 exon
chr7:12234270-12234576
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACCACCCCTCCCGCCCTCAGCGC
3' ss Score
9.89
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GACTGCCCCCCAGGGGCCATACCATTCCGAGACCTGCAGTGTTCTCTCTACAATGGCCACCCCGTCCTGGGCACCCAGAAAACCTATCAATGGGTGCCCTTCCACGGGG
Seq A exon
CGCCCAATCTGTGTGACCTCAACTGCCTGGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGGACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
Seq C2 exon
AGCGCAGGCTGTGACGGACTACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGTGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCGGTGACTGCCCCATCCCGCCTCACGGCCTGCACTTGAGGAGCATGGTGGACAGGGGTCCCTTTAACGAGTTTGGCTCCTGGGAGCCAAGACTCTTGCTGATTGGACAGGTTAAGGCCCGGCTCCTCGAGGCCTTCCCCTGATTGGCCTCTGACAGAGCGTCCCACCCTCCCTCGAATAGATGCGCTTTTAACCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787-'14-12,'14-10,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATTCCGAGACCTGCAGT
R:
GTCCACCATGCTCCTCAAGTG
Band lengths:
252-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]