DreEX6046039 @ danRer10
Exon Skipping
Gene
ENSDARG00000042186 | paplnb
Description
papilin b, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-6023]
Coordinates
chr20:33606109-33608228:-
Coord C1 exon
chr20:33608126-33608228
Coord A exon
chr20:33606291-33606421
Coord C2 exon
chr20:33606109-33606206
Length
131 bp
Sequences
Splice sites
3' ss Seq
CGCTGTTATATTTTTTCCAGCTT
3' ss Score
7.53
5' ss Seq
AGAGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
GAATGCCCTGCTGGATCTAGAGATTTCCGTGAGGAGCAGTGTTCCCACTTTGACCAAATGACCTTCCAGGGGAAACGTTATACCTGGCAGCCATACTATGGAG
Seq A exon
CTTCAAACCCGTGTGAGCTGGTCTGTGTGCCCAGAGGAGAGAACTTCTACTACCGTCACAGACCCGCTGTGGTGGACGGCACTCTATGCCACGTGGGCCGCAGAGACGTGTGTGTTGAGGGCGTCTGCAGA
Seq C2 exon
GCGGTGAGCCATGGAGAGATTGTGGGCTTTGAGGATCGTGATATTCCTGTCACTTCTAGACATGGACCTGGTGCTGCTGTCCATCTGGACACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042186-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGCTGGATCTAGAGAT
R:
CAGATGGACAGCAGCACCAG
Band lengths:
187-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]