RnoEX6029295 @ rn6
Exon Skipping
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107254369-107257961:+
Coord C1 exon
chr6:107254369-107254471
Coord A exon
chr6:107257058-107257188
Coord C2 exon
chr6:107257838-107257961
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCTTGCCTACCCAGCCC
3' ss Score
7.75
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
AGCTGCCCAGACAGCGTGCGGGACTTCCGGGCAGAGCAGTGTGCAGAATTCGATGGCACCGACTTCCAGGGTCGGCGCTACCGGTGGCTGCCCTACTACGCAG
Seq A exon
CCCCCAATAAGTGTGAGCTGAACTGCATTCCCAAGGGGCAGAACTTCTACTTCAAGCACAGGGACGCTGTGGTGGACGGGACACCCTGTGAACCCGGCAAACGAGACATCTGTGTGGAAGGCGTCTGCCGA
Seq C2 exon
GTCGTTGGCTGTGATCACAAGCTGGACTCAACCAAGCAAGAGGACAAGTGTCTGCAGTGTGGGGGCGATGGTTCGTCCTGCTACCCAATCACAGGAACCTTTGATGCCAATGATCTCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(12.1=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCCAGACAGCGTG
R:
TCTGCTGAGATCATTGGCATCA
Band lengths:
226-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]