GgaEX6038129 @ galGal4
Exon Skipping
Gene
ENSGALG00000009315 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr5:25612516-25614142:-
Coord C1 exon
chr5:25614040-25614142
Coord A exon
chr5:25612987-25613117
Coord C2 exon
chr5:25612516-25612639
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTCTCCTACCAGCAC
3' ss Score
10.1
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AGCTGCCCAGAAGGCTCCAGAGATTTCCGAGCAGAGCAGTGTGCAGAGTTTGATGGGACAGAATTTCAAGGAAAGAAATACAAGTGGCTTCCTTATTATGGAG
Seq A exon
CACCCAATAAGTGTGAGTTAAACTGTATTCCAAAGGGAGAAAACTTCTACTACAGACACAAGGAAACTGTGATAGATGGGACTACTTGTGAACCTGGCAAGCGGGATATCTGTGTAGAGGGAGTTTGTCAA
Seq C2 exon
GCTGTTGGCTGTGATAACATACTAGAATCTACCAAGAAGGAGGACAAGTGCCTACAGTGCGGAGGAGATAACAGCACCTGCTATGATGTGAAGGGCACTTTTGATGTACCCAACCTCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(12.1=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGCTCCAGAGATTTCCG
R:
TTGGGGAGGTTGGGTACATCA
Band lengths:
218-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]