HsaEX0045426 @ hg19
Exon Skipping
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:19262]
Coordinates
chr14:73712781-73725767:+
Coord C1 exon
chr14:73712781-73712883
Coord A exon
chr14:73716692-73716822
Coord C2 exon
chr14:73725687-73725767
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCCTGCCCACCCCAGCCC
3' ss Score
6.99
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGCTGCCCCGACGGCGCCCGGGACTTCCGGGCCGAGCAGTGCGCGGAGTTCGACGGAGCGGAGTTCCAGGGGCGGCGGTATCGGTGGCTGCCCTACTACAGCG
Seq A exon
CCCCAAACAAGTGTGAACTGAACTGCATTCCCAAGGGGGAGAACTTCTACTACAAGCACAGGGAGGCTGTGGTTGATGGGACGCCCTGCGAGCCTGGCAAGAGGGATGTCTGTGTGGATGGCAGCTGCCGG
Seq C2 exon
AGGTCCCCAGCATGCAGGATGTGCACACCCCTGCCAGCAACCCCTGGATGCCGTTGGGCCCTCAGGAGTCCCCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767_MULTIEX4-1/10=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCGGGCCGAGCAG
R:
AGGGGACTCCTGAGGGCC
Band lengths:
156-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)