MmuEX6082013 @ mm10
Exon Skipping
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:83772122-83773947:+
Coord C1 exon
chr12:83772122-83772224
Coord A exon
chr12:83773108-83773238
Coord C2 exon
chr12:83773824-83773947
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCTTGCCCACCCAGCCC
3' ss Score
7.6
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
AGCTGCCCAGACGGCGTGCGGGACTTCCGGGCCGAGCAGTGTGCAGAGTTCGACGGCACCGACTTCCAGGGTCGGCGCTACCGGTGGCTGCCCTACTACGCAG
Seq A exon
CCCCTAATAAGTGTGAGCTGAACTGCATTCCCAAGGGGCAGAACTTCTACTACAAACACAAGGACGCCGTGGTGGATGGGACACCCTGTGAGCCTGGCCAGCGGGACATCTGTGTGGACGGAGTCTGCCGA
Seq C2 exon
GTGGTTGGCTGTGATCACAAGCTAGACTCAATCAAGCAGGAGGACAAGTGTCTGCAGTGTGGGGGTGATGGCTCATCCTGCTACCCGGTCACAGGAACCTTTGATGGCAATGATCTCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223-'1-15,'1-4,8-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(12.1=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCGGGCCGAGCAG
R:
TCTGCTGAGATCATTGCCATCA
Band lengths:
205-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types