DreEX0053395 @ danRer10
Exon Skipping
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51090111-51092535:-
Coord C1 exon
chr17:51092433-51092535
Coord A exon
chr17:51091439-51091569
Coord C2 exon
chr17:51090111-51090234
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTTCTGTCTGCTCAGGAG
3' ss Score
8.27
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GACTGTCCTGAGGGTTCCAGGGATTTCAGAGAAGAGCAGTGCTCTCAGTTTGATGGCACTGATTTTCAAGGGAAGCGCTACAAATGGCTGCCATACTATGGTG
Seq A exon
GAGAGAATCCCTGCGAGCTCAACTGCATCCCCAGAGGAGAGAACTTCTACTATCGGCAGAAGTCATCGGTGGTGGACGGGACGCCCTGCCGGCCCGGAGGAAAGGACATCTGTGTGGACGGACTCTGTAAG
Seq C2 exon
CGTCTGGGTTGTGATCATATGCTGGAGTCGCCGCAGGAGGAGGACGCATGTCTGCAGTGTGGAGGAGACGGACAGTCTTGCAGTCGGCTCAAAAACAGCTTCTCCATGCGCAACCTGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.9=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(12.1=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCCTGAGGGTTCCAGG
R:
GGTTGCGCATGGAGAAGCT
Band lengths:
218-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]