GgaALTD1002551-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3130285-3130897:-
Coord C1 exon
chr28:3130774-3130897
Coord A exon
chr28:3130743-3130773
Coord C2 exon
chr28:3130285-3130368
Length
31 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAAT
5' ss Score
1.2
3' ss Seq
GACTCCCTGCCCACCTCCAGGTC
3' ss Score
8.81
Exon sequences
Seq C1 exon
AGCGTTGGCTGTGATGGGATCCTGGGCACGGGAGCACAGCCCCGTGTCTGCAGCCGGTGCGGCGGTGGGCAGGATGGGTGCCTCTTTGTGCACCGGCTCTTCCAGGACACGGAGCCCTTCTCCG
Seq A exon
GTGAATGAACATTGCCCCGGCCCCTCCATGG
Seq C2 exon
GTCATTTTGGGTACATGAATGTGACCAAGATTCCCGCTGGGGCCACCAACATCAAGGTGACGGACAAGAGCCGCAACTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298-7-10,8-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(9.9=26.2)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGGGTGCCTCTTTGTG
R:
GTCCGTCACCTTGATGTTGGT
Band lengths:
120-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]