HsaINT0005051 @ hg19
Intron Retention
Gene
ENSG00000106624 | AEBP1
Description
AE binding protein 1 [Source:HGNC Symbol;Acc:303]
Coordinates
chr7:44150324-44150656:+
Coord C1 exon
chr7:44150324-44150408
Coord A exon
chr7:44150409-44150511
Coord C2 exon
chr7:44150512-44150656
Length
103 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGC
5' ss Score
4.9
3' ss Seq
TGAGGCCTGCCTCTCCCCAGACC
3' ss Score
8.78
Exon sequences
Seq C1 exon
TGACGATTTTGTGACCACCTTCTTCGTGGGCTTCAGCAATGACAGCCAGACATGGGTGATGTACACCAACGGCTATGAGGAAATG
Seq A exon
GTGGGCACCATGCCCAGGCTCTTGGCTCTGCTCCCATTGTCTGGGCGAGGGGTGGGCTCTCAGAGGGGCTGGCAGTACTGCTCTGAGGCCTGCCTCTCCCCAG
Seq C2 exon
ACCTTTCATGGGAACGTGGACAAGGACACACCCGTGCTGAGTGAGCTCCCAGAGCCGGTGGTGGCTCGTTTCATCCGCATCTACCCACTCACCTGGAATGGCAGCCTGTGCATGCGCCTGGAGGTGCTGGGGTGCTCTGTGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106624-AEBP1:NM_001129:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(60.0=53.8)
A:
NA
C2:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGATTTTGTGACCACCTTCT
R:
CACAGAGCACCCCAGCAC
Band lengths:
226-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)