RnoINT0014650 @ rn6
Intron Retention
Gene
ENSRNOG00000013720 | Aebp1
Description
AE binding protein 1 [Source:RGD Symbol;Acc:1306922]
Coordinates
chr14:86107609-86107931:+
Coord C1 exon
chr14:86107609-86107693
Coord A exon
chr14:86107694-86107786
Coord C2 exon
chr14:86107787-86107931
Length
93 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
AGAGGCCTGCTTCTCTCTAGACC
3' ss Score
5.76
Exon sequences
Seq C1 exon
TGACGACTTTGTGACTACCTTCTTCGTGGGCTTCAGCAATGACAGCCAGACCTGGGTGATGTACACCAATGGCTATGAGGAAATG
Seq A exon
GTGGGTGCCACAGAGATGCTCGACTCTCGTGTGTGGACCAGGGAGGACGGTTGGGAGTGGTAGGGTGGGACCCAGAGGCCTGCTTCTCTCTAG
Seq C2 exon
ACCTTCCATGGGAATGTGGATAAGGACACACCTGTGCTGAGTGAACTCCCCGAGCCAGTTGTGGCCCGTTTCATCCGCATCTATCCACTCACCTGGAACGGTAGCCTGTGCATGCGCCTGGAGGTGCTAGGCTGCCCTGTGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013720:ENSRNOT00000018846:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(20.1=100)
A:
NA
C2:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTCGTGGGCTTCAGCAA
R:
CTACCGTTCCAGGTGAGTGGA
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]