HsaINT0005062 @ hg19
Intron Retention
Gene
ENSG00000106624 | AEBP1
Description
AE binding protein 1 [Source:HGNC Symbol;Acc:303]
Coordinates
chr7:44147228-44147530:+
Coord C1 exon
chr7:44147228-44147299
Coord A exon
chr7:44147300-44147407
Coord C2 exon
chr7:44147408-44147530
Length
108 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TGAGCCAGCCTCCCCCTCAGTTG
3' ss Score
1.91
Exon sequences
Seq C1 exon
AGCCGGAGGAGGAGACCGAGCAACCCACACTGGACTACAATGACCAGATCGAGAGGGAGGACTATGAGGACT
Seq A exon
GTGAGTAGGGTCCTGCCAGCCCCACCTGGGTCGGACCCCTGGCCTGGGGGATGTGCCAATGGGCCCATCCCAGCCTTGGGCCCCACTCTGAGCCAGCCTCCCCCTCAG
Seq C2 exon
TTGAGTACATTCGGCGCCAGAAGCAACCCAGGCCACCCCCAAGCAGAAGGAGGAGGCCCGAGCGGGTCTGGCCAGAGCCCCCTGAGGAGAAGGCCCCGGCCCCAGCCCCGGAGGAGAGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106624-AEBP1:NM_001129:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGACCGAGCAACC
R:
CAATCCTCTCCTCCGGGGC
Band lengths:
190-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)