RnoINT0014661 @ rn6
Intron Retention
Gene
ENSRNOG00000013720 | Aebp1
Description
AE binding protein 1 [Source:RGD Symbol;Acc:1306922]
Coordinates
chr14:86104344-86104632:+
Coord C1 exon
chr14:86104344-86104415
Coord A exon
chr14:86104416-86104521
Coord C2 exon
chr14:86104522-86104632
Length
106 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
AGAACCTGCCTCTCTCTTAGTTG
3' ss Score
5.21
Exon sequences
Seq C1 exon
AGCCAGAGGAGGAGACCGAGATGCCCACACTGGACTACAATGACCAGATAGAGCGGGAAGATTATGAAGACT
Seq A exon
GTGAGTAGGGCCTCCCCCTGGGCGGGGACTAGAATCTGGCCTGGGCAGTGAGGGTTCAACCTGAGGCCCACCCAGCAGGGCTGCTCAGAACCTGCCTCTCTCTTAG
Seq C2 exon
TTGAGTACATCAGGCGCCAGAAGCAGCCCAGACCCACACCCAGCAGGAAGAGGATCTGGCCAGAGCCCCCTGAGGAGAAGACCCAAGAGCCGGAGGAAAGGAAGGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013720:ENSRNOT00000018846:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGAGGAGACCGAGATG
R:
CTTCCTTCCTTTCCTCCGGCT
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]