HsaINT0008587 @ hg19
Intron Retention
Gene
ENSG00000229089 | ANKRD20B
Description
ankyrin repeat domain 20 family, member A8, pseudogene [Source:HGNC Symbol;Acc:23666]
Coordinates
chr2:95519283-95522820:-
Coord C1 exon
chr2:95522712-95522820
Coord A exon
chr2:95519398-95522711
Coord C2 exon
chr2:95519283-95519397
Length
3314 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
3' ss Seq
AAATCCTCTTACTCTCGTAGAAC
3' ss Score
6.65
Exon sequences
Seq C1 exon
CCGAATTGCAGAAGATCCACAGGGCAGCTGTCAAAGGCGACGCCGCGGAGGTGGAGCGCTGCCTGGCGCGCAGGAGCGGAGACCTGGACGCCCGGGACAAGCAGCACAG
Seq A exon
GTAGCGGGGGCTCAGCCCGGGGTGGGAGGGGGTCCCCAGGCCCGGCTTCCCCGCAGACCCTGGGACGGGGCCTTGCAGGGCGCCGGGCACCCTCGGAGCGGCGGAGCCAAACGGACTCTCAGCTGTTTTCCATCCCTCATAATTCTCTGGCTGGAGCAGTTGGAGAATTTGAGTGATTTAACTCACAAAGTTAAGCATATACAGCGTTGTTATTTTTAACGTACGCTTTTAAAACATGGTTTATATACATTATAGGAGGTGCCTAATGAGAGAACTCGTTCCCCTATCAAAAATACCGTGAGTTATTTCAGTGGGCGAAAAGTTGTCAGATAAGAGAGCTTACTTGAAAAATATTTACTATATTATATATATATATTTTTTCAGATGAAAAGTATGTTTTCATTTTATAGGGAATTCATTATATATATATATATTTTTTTGAGTCGGAGTCTCGCTTCTTTGCCCAGGCTGGTGTCCAATGGCACAATCTTGGCTCACTGCAACCTCTGCCTGCCGGGTTCAAGCAATTTTCCAACCTCAGCCTCCCAAGTAGCTGGGATTGCAGGCAGGTGCCAGCATGCCTGGCTAATTTTTGTATATTTAGTTTCACCACGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTCATCTGCCTGCCTCCGCCTCCCAAAGCGCTGGGATTACAGGTGTGAGCCACCGCGCCTGGCCTATGTTGTTTATTATATATCGTAAGATATATATATATATATATTACTGATATGTATACATATATAACAGATATGTTATATATATCAGTTATATATACACATGAGATGAAAAGTACATCTTCATTTTACAGAGAATTCTTTCAAATCAAATCATCAAACACTCTAAAAGTGGGCAAAGTACCTTTTTCCAGATCTACAAGTTATTTATATACATAGGAAAAAATCCTTTGCATTTCTGGTATAAGAATTTAAAAGAGGAATGAAACAGTTTTCTATCCACAATATTTGTGAGGATGTTTTATACTGCTGCTTAAAGTTTAAGTTGCTGATTACTTTTCAAAGTACTCATTTGAAAATGGTAAGTACTACATTTAAAAAGTGTGTAAGCCCTTTACCCACCAATTCCATTATACTAAAATACCCTTAGGAAATAAAGAGACATGCACTTTATTTTTCACAGTACTTACTTTAAAAAGAACCCATAGAATGGATCCTATAAATAAATTTCAGTTGCATCCATAGGATGGAATAATATGTGACCACTGAAGGTGGCAATAGATACAGAAGTACGTTGATGTGCAAAGATGTATTTTGTTATAGCTAGCGAGGAAAAAAAATTAGTTAAATTATACATACACATACTATGGTCTTGTTTTAGCAAAAATATGTACAAAATATAAAATTTGTAATTTCTGAGCATTTGTATTTTAAGTAAAGTTTTTTTCCTTTTTCTTATCTGTGATTGCTGCAGTGAGCATGTACAAAACTTCTAGTAAAAGTTTATTATTAATGGAATAATCCTTGGGAAGAGAGGAATATGAATCTTGTGCTGATGAAAATAATTTCTCACTTTCTATTGTTTATCATTATTGTGTGTGTTGTTATCTTCTTTGAGCTTTTAGCCTCCTCAGAAGTAAAAAGGGAATATTTTTATCTGTTTCCAGATTTTATTATCTATATATTTTATTATGTACATATGTTTTTCTTATATACTCATTCCATTTATGCAAACAAAGCTGGATTGATCATTTCATTTTAATTGTATTCTTTAAAAATAAAATAACATATAAATAATTACTATTGCAAAAATATTGCTTTATAGGAGTTTATTTAAAAATATTGAACTCCCCAACTGTATTTATCCATTCTTTCATTCTATTTATGGATCAAGCGTAACCTGAGTACCTGCTATGTAGCAGACATATTCTACCATCTCTCAGGACCCGTCCATCCTTAAACACTTCATGTTTACCTGTCCCGCCTGCACAAGCTGAGAGATTTAAAATAGGAATATTGGGACTTAATCTCCTTGAAACTTTATCTCCCACCTTTCAAACAAAAGCATTTCTGAAGTTAGAAAATAGAAGATAACCTTTAACTGCTCTTTCGAAAGTTTATCAGTCTTAAATACTAATATTAATCATTGGAAAGTCTTATTTGCATATATTCTCTAAGTATAAATATTGAATACAATGAGCCATATGTATTCATTTGAATCATGAGTTTCCTTTGGCTTCAAGTTGTTTGAAAATCAAAGAATTAATTTGTTTAAAAAATGCATTATTGTTATTTCAGTGCTCTTTCCCCATAGTACCTTTAAGAACTAAAATGTATTTAAGTTTCAGTTACATGCTTAGAACTGCCCTAGACCTGCTGAGTATACCATATTCTACTTAATGTAAGGTCTCATGGATTGCGTGATGCCCCGCTATTTTATATATCAATAAGATAATTTTTAAAATGCTACCAATTATAGTTATAACAAATCATGAATTATAAGTGACATTCCAATGTCAGAGGTGTTAAAATGTGACCTACTCGTTAAGTCATCCTGCAAAGTAGGTATAATTGTATCATTCTACCTAATTAAAATGGTTTTGTTTAGTAGTAATAGTAATAATTATAATATCTGGCTGGGTGCAGTGGCTCACACCTGTAATCCCAGAACTTTGGGAGGCTGAGGTGAGAGGATTGCTTGATGCCAGGAGTTTGAGACCAGCCTGGGCAACAAAGTGAGATTCTTACTCTACAAAAATTTTTAAATAAATAGCTGGGCATGCTGGTGCTCATCTGTAGTCCCAGCTACTCAGGAGGCTGGGGATGGAGGATCATTTGACCCAGGAGTTCCAGGTATAGTTACACCATTGCACTCCAGCCTGGGCAAAAGAGTGAGACTTTGTCTCAAAAAACAAAAATCTTAGAATTATTGAGTTGTTGTAGGAACTGTTCTACATACTTTACATAGCTTCTCATTTAAGCATAACGATGGTGTCCTATGAGATAGCTACTATTGTCATCTTTATTAATGAGGAAGTTGAGGCACAGAAAGGCTAAGCAATAGTTGGTAAGTGTCAAGGCTTAAAGTAGGACTCAAGCCCTAGTTGAACGGAATCCAAAGACTGAGCTCTTTCTACTCAAATAGGCTGCTGTTTTCATTAAGGCAGTGAGCAATAAGAGCTAGTAAGTATTGTACTTTCTTCAAAAAAATTATTTGTTTTGAAGGCAGAGGAAAAACATGCTATTCAATTTTTACAGTTACATGAATGATTGTATGTTTTGAGATATTGTACTACAGTTTCTTAAAAAATCCTCTTACTCTCGTAG
Seq C2 exon
AACTGCTCTACACTTGGCCTGTGCCAGTGGCCATGTGCAAGTGGTCACTCTCCTGGTTAACAGAAAATGCCAGATTGATATCTGTGACAAAGAAAACAGAACGCCTTTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229089-ANKRD20B:NR_003366:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)