Special

MmuINT0015535 @ mm9

Intron Retention

Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118509289-118512274:-
Coord C1 exon
chr6:118511831-118512274
Coord A exon
chr6:118509404-118511830
Coord C2 exon
chr6:118509289-118509403
Length
2427 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
ATGTGCTCTGGTTTTCACAGGAC
3' ss Score
9.62
Exon sequences
Seq C1 exon
AGCAAGAAGGCGCGGGTTGCTAGTTTGCAGCTCGGCTTGGCGATTATTGTGCTTTAAAAACCTGCCGGGCCATGCAGCGTCTTTCCCGGTGGGATCCCGTGCGTCTAGGCCGGCTTTTCAATAAGTGCCCTAGCTGCGTTGTGTTGTCAGCCAACGTTGCGCGGGGAAGAAGGTGCCTGTGAGGGGCGTACCCTCTGCCATGAAGAAGATTTTTGGCTTCAGGAGTAAGGGCCCATCGCCCTTAGGCCCCTCTGCCCGCCCGCGCAGCAACTGCGTGGGCTTTGGACGCGAGAGTGCTAGTGGCTCCCACGTGCCCAGGTACCATATTCACGACAAGGATATGGGCAAGATCCACAAGGCTGCAAGCGTGGGAGATGTAGCCAAAGTGCAGCATATCCTTATCCTTGGAAAAAGTGGCGTGAACGATAGAGACAAGAAGGACAG
Seq A exon
GTAATAAATGGCCCGCCAGTTAGCGGGGCGGGACGAAGCTGGTGGGGGAGCGTGCACCTACCTTGTCTGGCTTTGGGGCTGGAAGACAGAGAGTCTATCTTTCATTAAGGAAGCTTGACTCTTCCCACCTGGCTTTGAATGCCTAAGTCTTAGTGGGGTCTAAGCCCTGACCTGTATGAACAGCAAGGACAGCAACAAAAAACACTTCAGCTGGTTTCTGATCCACTGACAGTTCCCTTCACTGGCAATGTAAAGCGAGTTAACTAACATTTTAACTTTCTGCATACATATAAGAAAGTTTTATGTTGTAGAAATACATAATAGGAGAAATGTTTCTGTTCAAGGTTAAAAATTCTTCCACTAACATACAGGATCCATCTTATCACTGCCGTACACCTGTGTGAATGGTTTTGGTTGGTTGGTTTGTTTTTACTGCATTTTGAAGTGGGAAAATAGTTCCATATTCTCGAGTCAAAGATTGGTAATTCCCAGAACTCGAACTCTGAATATCCTGATCAATTTAACGTAAGCCAAACCCGACCGTCAGCGTTTTAACAATTTTGAGTTTCTTATGTTGCTTTTGATTTTGTGATGAGACGAGAAAAAAAAAACTTTCTAAAGGATAAAACTACTAGTTTTCACAAGTCAGTCGTTTACTAGCAGCCAAAGAGACACAGCAGTGAGCAGGGTGGAATAGAAAACCCAGAACATATCCAATCAAGTATATGTAAGAATTTAGATATTGCTGGGCAGTGGTGGCTCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGGGGCCAGCCTGGTCTACAGAGTGAGCTCCGTGACAACCAAGGCTACACAGAGAAATCCTGTCTCAAAAAACAAAACAAAACGAAAAAACCAACCAACCAAACAAACAAACAAAAAAACCAAAAAAGAATTTAGAAGTTGATTCTGGTGACACCCCAGTTAGTAGGGAACAAACACTTAGGAATGAAATGGTTGTTGACTTGTTTGGAGAAAACTAGCAACATTTCTATGTCACTAAAATAAATCCCTGATAGAATATAAGTTAAACACTAAAAGAAAACACAGTGAGAAAAGTACCAAAACAAAACAAAGAGATGAGGAACGACTGCAGAACCACTGTGTGTGTGAGTGTGTGTGAGTGTGTGTGTACACACCCGTGTATGTATCCGTGTATTGGTGATTGAATGCAGGTTTGTAGTGTATCCTCAGGATACTTTCTAACATTGAGCTTTTTAAAATGAAGCATTCTCAAGACCCATTGAACAAAATCTGAGGATAAAGGGACTGTATACTTGCAAAGTGTTCACAGTATGTATGTATATATATAATATATATACACACATATGTATATATATTAGTATATATGTGTGTTATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAGAGCAGTGTTCCTGCTGAAGCTGGTGTTGCTTAGGGCTTCCCAGTAGATGCACTGATTTTTATGTTGCTTTGTATCGTGGGTGGGAGGGGAAGTACGTCTGCTTCCATCCTTTAGTTTGTGTGGCTTTAGTGAGATGTGTTTCACTCAGACAAACAGTAGTGTTATTCAGGGGATCTCCCCCACCCACCCCATTGGTTCAAATATGGTTTATTCTTTTGTATTCATAGCCTGGGGTTTGCTGGTATACTGTTAGTCCTTTCCATCCCCAGTTCTCATCTCTTTATCTGTCCCCTGTCATACCTGCCCCTCACCCATGCACACATACACAAGAACTGCAGGCTCGCCTTGTGGCCAGGGCTGTCGCTCTATTTTCTTTCTTTTTAATATTCTTAAGAGAGATAGATGATAGATAGGTAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAGAGTGTGTCTGTGTGTGTGTGTGTGTTAGTGAAGATGTGTGTATGCCATGCTGTGCTTGTGGAAGCCAGATAACTTTCAGGAGTCAGTTCTCCTTTTAACATAGGATTTAGGGAGTGTATTGAGGTTGTTGGGCTTTTGTGGCCAATGCCTTTGTCCAGAGAAAGGCTAAGTGATGACTAGTAAGCAGCAGACCTTAAAGCCATGTTTATACCCAAGTCCAAGCCACATCCAAAGGATATATACACTTCTTTGCAAATTGGCTGCTCTGGGCTAGGAATGTAACTCAGTAATTGTTTGCTTAGCAAAAGTCTCTGCTGCAAAACACACACACACACACACACACACACACACACACACACACACACGGTTGTATTTTCAAGAATGTACTGTTGTCTGCAGAAAAATACTTGTTTTGAAAGAAGATATAACATAGCGTTCTACATTTCATGAAATGTATTTTTAGATGATACTATGTAGTTTTCCTAAGATGTGCTCTGGTTTTCACAG
Seq C2 exon
GACTGCTCTACATCTTGCCTGTGCTTACGGCCACCCAGAAGTGGTGACTCTCTTAGTAGAGAGAAAATGTGAGATAGATGCCCGTGACAGCGAGAGCAGCACGGCCCTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-Ankrd26:NM_001081112:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.317 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127962=Ank_2=PU(33.0=37.8)

							
A:
NA

							
C2:
PF127962=Ank_2=FE(40.4=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000108449





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000007971, ENSMUSP00000086136, ENSMUSP00000108449f296A, ENSMUSP00000108449f297A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:27093800-27100084 
ALTERNATIVE
HsaINT0008638
(ANKRD26)
Human
(hg19)
chr10:27382729-27389013 
ALTERNATIVE
HsaINT0008638
(ANKRD26)
Rat
(rn6)
chr4:150612380-150616449 
LOW PSI
RnoINT0017740
(Ankrd26)
Cow
(bosTau6)
chr22:126362-126594 
Chicken
(galGal4)
chr1:24065048-24067097 
LOW PSI
GgaINT0109004
([1])
Chicken
(galGal3)
chr1:26091375-26093424 
LOW PSI
GgaINT0109004
([2])
Zebrafish
(danRer10)
chr25:3516218-3518643 
LOW PSI
DreINT0001018
(ANKRD7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"