HsaINT0008638 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27382614-27389427:-
Coord C1 exon
chr10:27389014-27389427
Coord A exon
chr10:27382729-27389013
Coord C2 exon
chr10:27382614-27382728
Length
6285 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
AAGTCCTGTCACTCTCATAGGAC
3' ss Score
6.24
Exon sequences
Seq C1 exon
ACTTGTGTCTAGCGGGATCGCTTGCTTGGTAACCCGGAGGGAGAGATTGGAAACCGCGGAGTTTCCTTTGGGAGGCTGCGGCCAGCCGGGGCTGACTTGTTATGTTGGGCTCCGGAGGCCGTTAAGAGCCGAGAGAGACATGAGGTGTCTCTGAAGCCCGGTCGCCTGGGCCATGAAGAAGATTTTTAGTAAGAAGGGCGAGTCGCCCTTGGGCTCCTTCGCGCGGCGGCAGAGGAGCAGCGCGGGAGGCGGGGGCGAGCCGGGGGAGGGCGCCTACTCGCAGCCCGGCTACCACGTCCGAGACCGAGATCTCGGCAAGATCCACAAAGCTGCCAGCGCGGGTAATGTGGCGAAAGTGCAGCAGATCCTTTTGCTCAGGAAGAATGGCTTGAACGATAGAGACAAGATGAACAG
Seq A exon
GTAATAGGCGTCGCAAGCCCGGACTGAGTGCCACTGGAGTAGGCGGGCAGGAAGAGGGGCCCCTTTTGTGGGAGCCACCCAGGGCCTGGATCAGCCTCCCGCGGGCTCCGTAGCCCCTGGGACGGTGACACCTTGCAGGGCTCCAGCGCCCAGGCCGCCTTTCTGAGCAGAAAAACAAAAACAGAACTCTAGCTGGTTTCCGATCCCCCCGAAATCCCTTAGAGAGCACTTAAGTGACAATTTTAAAGTGAATTAACGAACAAAAGCACGTACAGCGTTTTATTTTTAATGTACACATTTAAGATACAATGTCATACACTTATGGAAAGGTGCATAATGAGATAAGCAGTTTCCATAATATAGCAACTTCTGGGTTAAAAATTATTTCTATAAAATCTGTTATTCGTCAGGCGCGGTGGCTCGCGCCTGTAATCACAGCACTTCGGGAGGCTGAGGCGGGAGGATTGCTTGAGGCCAGGAGTTCAAGGCCAGCCTGGGCATTATAGCGAGACCCCCCCCCCCAACTCTAATAGTCTCAGCTACTTGGAAGGCTGAGGCAGGAGCATCACTTGAGCCCAGGAGTTCTAGGCTGCAGTGAGGTATGTCAGTGACAACAGAGCAAGACCCTATCTTTCAAAAAGAAAAAGAAATAAAATGCCTTTAGGAAATAGATATACAAGTAATTTGTTTTTCTCAGCATTGCTTAAGCAGTGTATTAAGGAGAACCCATAGAATGGATTTTGTGAATAAATGTCAGTGCATGATAATATGTGACCATTGAAAGTGGCAGTAGAGGCCAGGCGTGGTGGCTCGCGCCTGTAAACCCAGCATTTTAGGAGACCAAGGCAAGCGGATATCCTGAGGTCAGAAGTTCGAGACCAGCTTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTAGGCATGGTGGTGGGAGCCTGTAATCTCAGCTACTCCGAAGACTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAAAAAAAGAAAGAAAGAAAAGAAAGTGGCAATAGATACAGAAGTGTATTGGCATGTGAGGATATACTTTGGTATCTCAAGTGAGAAAAAAAGTTTGATTATACATACAGACTGTGGTCTTGTGTTAGCTGAAAATATGTACAAAACGTGGTAAAATTTGGCCAGGCGCGGTGTCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTTTCTACTAAAAATACAAAAAAATCAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAGTGGTAAAATTTGTTATTTCTGGGCATTTGTATAATAAGTCAAACTTTTTTCTTTATGATTTCTGCAATGAGTATGTATAAAAGTTCTAGTGAAAATTTATTATTAATGAAGTAATCCTTGGGAAGAGAGGAATATGAATCTTGCACAGATAAAAATCATTTCCCACTTTCTTTTTTTTCTTTTTTTGGTGGATTGCTATCGTCTGACAACTTTTATCCTTTTCAGAAGTAAAGGGGATCTTGGCTGGGCACCTGTGGCTCATGACTGTAATCCCAGCACTTTGGGAGGCCCAGGCAGGAGGATTGCTTGACCCAGGAGTTCGAAACTAGCCTGGGCAACATAGCAAGACCCTGTCTCTATTAAAAATGAAAGGTAAAGCAGATCTTTGTTCTTGCCACCAAAAATTAAGAAGATAAAAAATAAAAATAAAAAAAGAAAAAGTAAAGGGTATCTTTTTATCTGTATTTATAGATTTTATGTATACATTTTATCATATACATGTTTTTATTATAGATTTATTATATATGCAAACAGGTACAATCATTTTATTTTAGTTGTGTCCTTATGACAATAAAAATACCAAATATAAATGATAATTAGGCTGGATGCAATGGCTTAGGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGAGGGTGGATCACTTAAGTCCAGGAATTCAAGACCATCCTGGCCAACGTAGTGAAACCCTTCTGTAGTAAAAATACAAATATTAGCCAGGTGTGGTGGTACACACCTGTAGTCTCAGGTACTTGGGAGACTGAGGCAGGCAGTAGAATAGCGTGCACCTGGGAGGCGGAGGGTACAGTGAGCTGAGATTGCACCACTGCAATCCACCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAACAAAACAAAACAAAACAAAAAAAAGATAAATATTATTGCAAAAGAATAAAAGAATTACTCTACTTTATAAGAATTTTATTTAAAAATATTGAACTCCCTAATGATTTTTCCATTCTTTCAATCCATTTATTCATCAATCATAACCTGAATACCTGTTATGTAGCAGACATAGTCTACTATCTCTTTTTTCTTTTTTTCTTAGACAGAGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCAGATCTCAGCTTTACTGCAACCTCTGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACAGCTAATTTTTTTTTTTTTTTGTATTTCTAGTAGAGACAGGGTTTCACTGTGTTAGCCAGGGTGGTCTCGATCTCCTGACCTTGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGGCTTGAGCCACCGCGCCTGGCCTTTTTTGTTTTTGAGGTGAAGTCTCGCTTCTTCGCCCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCAATGCAACATCCATCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCTAGTAGCTGAGATTCCAGGCACGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTATAGATGGGGTTCTACCCTGTTGGCCAGGCTGGTCTCAAACTCCTAACCTCAAGTGATCTGCCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAACCACCGCTAGTTATAAGCATATTAATGTAAGTGCGTAGTATTTTAATAAAATGTGGTAGAATATAGACTTGATCTTTGAATTGGAAACATAACAGTAGTGGACATGAAGATTTGCAGAGCTGATTTTTTTTTCTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCTCCTGGGCTGGAGTGAGTTGGCATGATCTTGGCTCACTGTAACCTTCTCCTCCCAGGTTCAAGCAATTCTCGTGCCTCAGCCTCCCAAACAGCTGGGATTCCAGGCACCCACCACCATGCCTGGCTATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCACGTTGGCCAAGTTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCAGGCCAGAGTTGATATCTTTGAAGTGAGGATTTTACTTCTATGCAAATTCTTTTCTGTCAGAGGTGAATCCCTATTTTAGTCATGAATATGATATTTATTCCCCTTTCACAACAGGAACTTCATATATATGTATATAAGTGCTGTGTGGTGTTCTAAACTATTTCAGTCTTGCATTAGCATTGTAATACATAATGTAGCTAATCTGCTATGAATTTGGGAATGCATTTTATGACAAATTTACAGAGCTGTCAGGGAAGATGGAAAGTTGCTGATTTCTCATATAAAACTGTCTTCATAGAGCTTGATGTGAATCTCCTGCACTTCTGGAAGCAGGTATTTAACTCATCCCCAGGAAATCAAGCCTGAGAGAAGTTCTGGTGAGCTGCTTGGCTCCTGTGTTGAGACTGGTCTGGTCTCTTAGCATTTGTTTTGGCAAAGAATGTTTGGATGTTTATAGAGGACAGATGAGAGCTCTGGTCAAGTATGAGAGCTGTTGGTGGGAGGGAGAATCCATTTGGGATCCCATATGAAAAGTCCTGTTAAGGGTGTGAGCAGGCCTTAGAAGAGGGTAATCCAAAGTGGATCTGTGGATTCCTTAGGAGCTAAGAGGAAAGAAAGGCCAGAGTGGAGTGCATTCATTCAGGTCAAGGCAATTGCAGGTGAAAACATAGTCTACTATCTCTCAGGACCTTTCCATCTTCAAAACCTTTATGTTTGCATACCTGCCCAGCCTGAGCAAGTTGAGAGATTTAAAATTAGACTATTAGGGCAATCTCAATTGAAGCTTTTCCTCCCTCCTCTTATTTATTTATTTTTTTGAGAGGAGATTATGCTCTGACACCCAGGCTGGAGTAAAGTGGCATGATCTCGGCTTACTCCAACTCTGCCACCAGGGTTCAAGTGATTCTCCTGCCTCAGCCCCCTCGAGTAGCTGGGATTACAGGCATGTACCACCATGTCCGGCTACTTTTTGTATTTTTAGCAGAGATGGGGTTTTACCATGTTGGTCAGGCTGATCTTGAATTCCTGACCTCAAGTGATCTGCCTGCCTTGGCTTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCACCCAACCCCTCTTTATAAACAAAAGTGTTTCTGAAGGTAGAAAATTATAAGAAATAACCTTTAATTACCCTTTTGAAAATTTATGTCTTAAACACGAATATTAGTCATTGGAAATATCTGCATATATTCTATAAATCTAAATATTGAATAAAATGAGCCAACCTATTCATTTGAATCCTGAGTTTCTTTTGTGTTGAAGTTTCTTGAAAACACAATAAGAATTACTTTGTTTTAAAAATCTGTTTTTCAATTTTAAAAATGCTTCCAATTATAGTTGTAATAAATCATGAATTACAAGTGGCATTCCAATGTCAGAGATATTGAAATGTGAGAAAATGAGCATCTTAGAATCACTGAAATACTGTGTTATCTCTAATTTTTTTTTTTTTTTTGTAGACAGGGTCTCTCTCTGTTGCCCAGGCTAGAGTACAGTGGCACAATCACAGCTCACTACAGCCTCAACCTCCTGGGCTCAAGCGATTCTTTGGCCTTAGCCTCCTGAGTAGCTGGGACCACAGGTGTTCACCACCATGCCTGGCTACTTTTTAAATTTTTATAGAGATGGAGTCTCACTATGTTGCCCAGGCTGGTCTCAAACTCTTGGACTCAAGCAGTCATCCTACCTCAGCTTCCCAAAGTTCTGGGATTCAGGCATGAGCCGCCATGCCTGGCCTTATCGCTGATCTTTAAAACATACTGTCAACTAGGTATAATTGTATCATTTCATTTAATTAAAACATCTTTATTAAACAGTAGTAATGGTAATTATATCTAACAATTATTGAGCTGTTATTTGTGCTAGGAACTGTTCTAAACATTTTGCATAGATTCTCATGTAAGCATCCCAGTGGTGTCCTATGAGATAGCTACTATTTTGATCCCCATTTTATTGATGAGGAAACTGAGGCACTTACTAAGCCATAATGAGTAAGTGACAGCTTAAAGTAGGATTCAACCCCAAGTTGAACTGAATCTAAAGGTCAAGCCTTTTCTATTCAGATAGGTTGCTCTTTCATTAATGTGGTGAGTAGTAAGAGCTAATAAATATTGTACTGTTTTCAGAAGAAAATTAAATACTTGTTTTGAAGGCGGAGGATTAACATGTGTATTAGTCTGTTCTCATGCTGCTAATAAAGACATACCCTTTATTATATGGGTAATTTATAAAGGAAAGAGGTTTAATTAACTCACAGTTCAGCCTGGTTGGGGAGGCCTCAGGAAACTTAACAATAAGGGCAGAAGGAGAAGCAAACATGTCCTTGACATGGTGTCAGCAAGGAGAAGTGCCAAGCAAAAGAGGGAAAAGCCCCTTAAGAAACCATCAGATATTGTGAGAACTCACTATCACAAGAGCAGCAGCACGGGGGAACCATCCTCGTGATTCAGTTACCTCCCACTGAGTCCCCCTCACCACACGTAGGGATCATGGGAACTACAATTTGGGATTTGGTTGGGGACACAGCCAAGATGAGATTTGGGTGGGGACACAGCCAAACCATATCAACATGCTATTTAATGTTTATAATTTTATGAACCATTGTATGTTTTGAGACAGTGCACTACAGTTTATAAAAAGTCCTGTCACTCTCATAG
Seq C2 exon
GACGGCTCTACATTTGGCCTGTGCCAATGGTCATCCAGAAGTAGTAACTCTCCTGGTGGACAGAAAATGCCAGCTCAATGTCTGTGACAACGAAAACAGGACAGCTCTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.461 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(62.3=40.7),PF0115012=GDA1_CD39=PU(18.9=29.6)
A:
NA
C2:
PF136371=Ank_4=PD(35.8=48.7),PF0115012=GDA1_CD39=FE(29.9=100),PF127962=Ank_2=PU(21.6=41.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)