GgaINT0109004 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24064036-24067212:+
Coord C1 exon
chr1:24064036-24065047
Coord A exon
chr1:24065048-24067097
Coord C2 exon
chr1:24067098-24067212
Length
2050 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
TTTACACATTTAATTTTTAGGAC
3' ss Score
9.9
Exon sequences
Seq C1 exon
TACCCTTAAGGTTATACCCACAAGCCCCACGACTACATTTCAGCCCAGCTTGCCGTCCAGCTTACAGAGAAGCTGGGATAACTACTTTCTCCTGCAAAGAGCAGTAGGATGGCACTCTGTGTTGCCACCTCCGAAATAAAATCCCGCAATTCTTCTAACACATCTGGAAGAAAGTAAATACACCCAGCTAAAAACACACCTTGCTCGTCATCCCTCCATTAAGTGAGTTGAATGGTGAAGGAGATGCCCTCAACATCGCTGCTCACAGAGTTTAGGTTTGGCCAGCTGGATTTGTTTGGCTGCTGCTTCAGCAAAAAGCTTTTTCTTAAGTGGTTTTTTTTTAGCTCTTTCTTCTGAAGTTCAAGCCTGAAGCAACAGACTTGTTTGCCACCTCTTCATTTTACAGAAACTGAGATGCAAGCGGCAGTTATTAAACAGAGGAAAAACTCGTGCTTTGAGGTCCCTATTAAATAATACCCACAGGGAGGCCAAGAATCAACCCTGCGGACACACGGACTGCTGTCCCTGCTACTATTACAGCAGCACCAAGCAACGGCACCGAGAGAACGCCGCTGGGCGCCTCCTGGCGCGACCGGCTCTGCGCATGCGCACGCTCCGCTGCTGTCTGCGGGCGCACACCCTCTAGCATCGCTGTGGCTCCGCCTCCCGCTGCGCATGCGCGGGGCTCCCGGCTCTGGGAGGGGGTGTGGGGTCGTTCTGTCTGTGACTTGGGCCGCGCTTTGGCGAGTGTACGGCGGCGTTGCGTGTAGTGCTTGGGGCTCCCCGGCCCGACAGAGTTCTGAGACGACATGAAGAAGATATTCGGCTTCGGAAGGAAGAAGAAAGGGGATCCGCCGCCCGGCAGCACCGCTTCGCCGTGTCCGGCCGGTGCGTACGAGCTCCGCCAGAAGGAGCTGGGCAAGCTGCACCGCGCGGCCGCCGCCGGAGACCTGGCCCAGGTGCGGCAGGGGCTGAAGAAGCACGGCATCGACGGGCGCGACAAGGCGCAGCG
Seq A exon
GTAAGGGCGGCGGGCCGGGCCGGGGTCCCCGCTGCCTGACCTGGGCACAGAGGTCTGCTGTCAGCGGGGGCTGCGCTTGGCTGGGACGGGCAGCAGCGGTGGCTCCGGCGTGCCCTGCCGGCCTGTTTCCCTCGGGGCTTCTTCGTGGGGCTGGCAGGCATTCCTCCGAGCTGAGAGCTCTCTTGGGGAGCTGATGGGTCGGGGCAGCGACAAGGCTGCGGGTTTCCTGAAGGCTTTCCTGCTTGTGGAGCTGATGGTGGTTCCTTCAGGTTGTCGTGTTCCCCGGTGCTTGGTAACAGCAGCCTTTGGGTGATGAGGGACTCCTGCATAGTTGCGTTGGTTACGGTTACGTTACCCATCCGAGCTCTTTGCAGTACACTGCTAACACTTCGTGCTGGTCAGCTCTCAGGTAATCATTGACAGGCTTCTCTTCAGAGATGAAGGATCTTGCACTCTCACTTGGGAAGTCCTCAGTGGGGACAGTCACCCTATGGTGACTGTTGTGTTGCTGCTGCAGTTTGTTCCATGTCTGTGGCAAGGCGTGATGAGTTCTTTGAAGTTCTGCCTGTTTTTTTCATCCTCATCTTCTCTGCCTTGAGGAAGCTGGTCCTGTGGAGGCTCATCAACCCACCCACGGTGGGATCTGTTAGGACAAGAGGGAGCGGCCTCAGCTTGCAGCAGGGGAGGTTCAGGTTGGATATTAGGATAAACTTCTCCAAAAGAGTGGTTGTGCACTGGAATGGGCTGCCCAGGGTGGCGGTGAAGTCACCATCCCTGGAGGTGTTCAAGAAACATGTAGATGTGGTACTAAGGGACATTGGTCGTAGGTGGACAGTCGAACTGGATATTTCTTTTCCAACCTTAATGATTCTCTTGGAAATTGCTGTGTTTCTGGCTCATGTCACTGCATTTGCGCAGCTCTCTCTTTCCATTCCCTGAGCTGTTGTGCTCCTGTCTCTCAGCAAAGTACCTCAACAGGTGTTCTGTTGCAAGGTTACTTGAGGTTTCCTAAATGCAGAGAAGGGATCTACACACAGTGATACACTCAAAATAAATAAATAAATTTTTAAAAAAGACGCTTTCCCTATAAGTTCTTGAGGAATTACAGGATTTTATTGCATGACCTTTGAGGGAGAAAGATCCTGATTGCTTTCTAGCTCCACCACTGCTCTGTTGGAGGAGCTGTCCCGCAGAGCTGCAGGAACACAGCCAAGCTTGTGTTGCTTTGCCCTGTGATTTAGGGGAGGAATGCCTGCAGGTACTGTTTGGATGACTGTGGCTTTAGATGCAAGCACACTGGTTAATTGGCATCAGACCCTTAGCAGTTCCACAGTTTGAAAAAGCCCCTTTATTTCTCTCTTTAACCTGAGGAAAAAAAGTTTTATTTTCTCATGTGTAGTGGAAACACAGCTATCCCTCCTTGAAGAGGACTTCCTCTGTGATATCCTACTTATATCACAGTTATAAGCATCAGGAATGTCAGATATTGCTTTCTTGTAGCCGGGATAGCAGTGTTCTGCTGTCTGCTCTGCCAGATGTTATCAGATGTTTGGTGCAAAAGTGTTCTACTGGTTGAAGTGATAGCCAAACTAGCACATGAATATTTTTTTCTGTAAAACTCATCTCCTGCATCTTTGGTACACTTCTGGCATGTGAATGATCCTGGGAGAACCTCGAGGTTTACATGCCACCGTAGACCTCAAATTCCCAAGCTTCAGTCTCCCTCACTGTACCACGAGTGCTTTTCTGCCAGAGGCTGCAAGCAGTGCCTCAACACTGGAATCTTCGTGGAAGTTCAGTTTTACAGCGGAGGAAATGTTCTCTCATTAAGCAAATGCAGTGGAGGGTTGTTCCTAGCCAGCCTCAGGCTTTGGGTATACAGCCACTGTTACCAGTAATGAAATAAGCTTGTTTTTATTTTATTTTATTTTATTTTGTTTATTTTGGGAGGTAATTTTGGGATGGAGAAATGAAATTTGCCCTATCCATGTACCACAGAGTGAAATGATTTATTTAGCTGTCAGTTTCAATTTACACATTTAATTTTTAG
Seq C2 exon
GACACCACTGCATCTTGCTTGTGCAAATGGACATGCGGATGTCGTTACGTTTCTAGTAGAAAGCAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(31.5=42.6)
A:
NA
C2:
PF127962=Ank_2=FE(41.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]