Special

MmuINT0004582 @ mm9

Intron Retention

Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23062996-23068027:+
Coord C1 exon
chr2:23062996-23063624
Coord A exon
chr2:23063625-23067912
Coord C2 exon
chr2:23067913-23068027
Length
4288 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GCACTGTGATTTCTCTATAGGAA
3' ss Score
9.32
Exon sequences
Seq C1 exon
ACCCTTGCATATTTGCGTCCACCAGTATGGCTTGACAAGAACTGTTCTGCCAACTGTCCCTGCAGTTGATAGACACTAAACCAGGGAGCAGACTTGAAGGGACAGGGACTGTGGGAGAGACTTGGCAAGCCTATGACAAGTGATAATATTTGGATAAGGATGAGTGGGCTTATTACATCGTTGATACTTAGATAACGAATAATGGGCTAATTATAAATATTAAAAACAGGAGGGTGGACTTATAATTCGATATGAGATGGGGAGAGTCTGCTTGTTATAATAACGTTGATACTGGGGCAGTTAACGGTTGGTTTGTTATAAATAACCTTGCCTGAGATGGGAGGAAAGTACAGCCGTGGGGAAGAGAGGAGGCCTTTGGGGTTTCCAGGCTTCTCTGCGCTGTGTTGCTGTCAGAAAACAAATAGGGAAGAGACCCCCTTGGGTTTCTGCGATATTAAGGCACGGAGAAGTAACCTGAGCTTTGGAAGGGAGGATCCTGCTTATTTAGACATGGCTTACTTTCCTGACAATGATCTGCACATGGCGGCCTGTGCAGGCGATTTACCTTTTGTGCGGCTGTACTTTACTCTGGGTAAATACGAAGTCAATCACAGAGACAGGGAGAATAG
Seq A exon
GTAAGAGATTCTTCAGACCTGGGGTCTGAGGGCAGTGTGGGCAGTGTGGAAGAAGACACCTCTACTCACTCCCGGGACAGGAACAGGAGTGGGGAGGGCCCAGCGCTGATTGTTGCCACTATATAGTGACCGTTTCAGCACCTGTGATCAGCACACCTGGGAGGAACCCCTGGCCCAGCCAACGCAAGGGCAGAAGTCTGGTTGCTTTCCCTTCCTCATGAGACCTTTAGAGAGTCAACAGACTATTTGAAAGTGTCAATTAACAAGAACAAATCATCATTTTAACTTTGTGTAATATTAGGAGTACAACGTTAGATACATTTTTTAAAAAGTGAAGAATTCTTTTTTTTTTTTTTTTGGGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTAGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCTGGCCCCCCAAAAAGTGAAGAATTCTTACAAAAGGAATATTTTATAATGTATTTATTACCTTCAAGCCTAAAATTCTAAGTAAAACCCAGTATCCACTATATATGATATGTATCAGAATATATATTAGAATATTAAGTATATATATATATGTTTATGTATATGTATATTAAGCCTGATGTGTATTGTAAGAAACTGAACTGAGGGTTTCTGTTTCCCCTGCCACAGTTATAAGCTGTACACCTCTACCTCTTGCTTCCAGTAGGAAGAAAAGAAACCCATAGCACTTTACTTTTATAAGCCTGCCTTAAAAGTCAAATTATTAGAAGAACACAGTTATAAAAAATTTCAATGACTTCATTGAATATTTTACCTTGAAGAAGGCATAGACAGACATAGAGGAATATTAGCCTAGTCATATATAGCTTACTATGCTAAGTGACAAACCAGTTTGATTGCATCTAAACAAGCATTGATTGGAAACTTAAATTAACAAACTATACGTACAAATCTAATGTATTATTTTCAAGTATTTAACTTGCAAATGAATTTTCCTCTTTTTTACTCATTAAATCAGCAGTCAGTTCTGCTACCTTTTAATACAGATCTGCATGTTGTGGTGACCCCAACCATAAAATTATTTTTGTTGTTACTTCATAATGGTAATTTGATATTGTTATGAATCATAATCTGTGTTTTCTGATGATCTTAGGCTACCCCTGTGAAAGGGTCATTTGATCCCCACAGGATAGGAACCACTGACGTACATGTTTAATTTGAACATTTGGTTTCTAGCCATCTTTTTATTTCTTTCTAGCTTATTTTCAGTGCTAGAGAATATAATCTACTTTAAAGCAGTGTGCAGGAGCCTGATATAGCTCTCTCCTGCCAGTGCCTCACAAATACAGAGGTGGATGCTCACAGCCATTCATTGGACTGAGCATAGATCCCCAATCAAGGAACTAGAGAAAGTGCCCAAGGAGCTGAAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACTAACCAGTATCCCCAGAGCTCCCAGGAACTAAACCACCAACCAAAGAGAGCACACATGGTGGGACTCATGGCTCCAGCTACATATGTCGCAGACAATGGCCTAGTTGGTCATCAATAAAAGGAGAGGCCCTTGGTCCTATGAAGACTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTGGTTGGTGAGCAGGGGAAGAGGGGAGGGGATAGGGGGAGGGTGTTTTTCAGAGAGGAAACCAGGAAAGGGGATAACATTTGAAACGTAAATAAAGAAAATATCCAATTTACAAAAAGAAAAAGCAGTGTGTTGGCATTGAGTCTCTCGTGCCTCCTGTGTAGTTAGTTGGTAATGGTCCTGCATATGCTTGTACTATTCTTTCAAATAGTCACTTGAAGAGTTTAATGTACAGAAGAGAATCTCACTCTTTTAATTTGGTGTGTGTGTGTGTGTGTGTGTGTGTAGTTATATTTTCTGGTGCTACTTAGTTTTTTCTGAGAAGAATCTATTTATCTGTGCTTATAGATTTTTATATTGTATAAATATTATTGAACATGGTTTTGTCCTATATAGACTTATACATATAATTGCAGACTAATTGTGTTGGAGGGTTGCTTTTCATTTATTCACTTTACATCCTTATACCAACCCTCTCCTCCCAGTTCCCCCTTACGCAGATCTTCCCCACCCCATTTACCCCTCCCTTCTCCTCAGAGAAGGGAAAATCCTCACTCCTGGCATCATCCCACCCTGACACATTAAGCCACTTCAGGACCAGGCACATCCTCTCCACTGAGGCCAGCCAAGGCAGCCAAGTTATGGGAATGGGATTCACAGGCAGGAACAATTAGGGACGGCCCCCGCTCATCTGTCCTGGATAGTTTTATGTTAACTTGACACAAGTTGAGAGGAGGGAACCTCAATAAAGAAAATGCTTCCATATGGTTGAGCTGTAGGGAAGCCTCTAGGACATTTTCCTTAACTAGTTATTGATAGGGGAGGCACAGTGCATTGTGGATAGTGCCATCCCTGGTCTGGTGGTTCTGTGTTCTGTAAGAAAGCAGGCTGAGCTAGCCATAAAGAGCAAATTCCTTCATGGCCACTGCCTCCATGTTCCTGTCCTGTCTTCTTTTGATGATGATGTGGAAGTGTAAGCTAAGTAAATCCTTTCCTCCCCAAGTTGCTTTGGTCATGGTGTTTCATTACAGTGAAAGAATTTCAAGATAAGATACTGTTCACAAGTATGAAAATAAAAGATAGCAAATATATACAGCTATTAATATTGCACAGGAATTGTCTTATTTTGTAATAGTTCCTATATAGGAGAATGAATCCCCTCCCATTCTCTCAATCCATTTAAATCTCAATCAGATTTAACCAAAATATCTACTACATACATAATACTATTTTTCAGGATCTATTCCTCCTTGAAAACCTCATGGTTCTTTTGCCCAGAGTTGCATTGTTGACTAAAATTAAATGATACTTCATCGTTTGATTCCCACAATTTCTTTCTTTGGCTTAAAAGTCTGAAAACCAAAGCTCTGGTTACTTTGTGCTGTTCTTGCTGTATTTGTAAAAAGTAAAATTTATTAAGTGCAATTGGCATAACTAGATTTCAAAGGACCCCTTTTATATAGGATTGCATTCTGACCCATTCTTTTGATTATTAATAAAATCTAAAAGGTGCTATCATTTATAGTTTTAAAACAGAAGAAGGTCATTCTAGCCTCAGTATCTTGGCAGGAGGAGCATGAGTGTTTGCCAGTCTAGATATGAAGATCCTGGCTCAAAAAAGTCACCTTACAGTTGTTGAAATGTAGAATCCATAAAACATCTACAAAATGGGTATAATTGTATATAATTGTTTTACTAACCTGTTTAACCATGTAAAGTTGGAGTAATATGATTATCTAGCATGTTATAAGTAAAACTTTCTTAATTTTTGTGTATATATTCTTAATGAATCACCACAATATTCTATTTTATTGAAGCAGAAATGAAGCCCAGAAAGGGTAAGAAATAATGTGTAGTTAACAGAGCTTAGAGTAGGAGTAAAATCTGCTAGAGTTCAAAGGTCTCCCCACCCCCACCCCGCCCCTGACGCATGCATGTGAACATTTGGTCATTAGATGGTAGCTCTGATTTGGGAGTTGAGGAACCTTATGAACAGGTGGACATTACTGTGGGTCAGGCTTTAGGGAGGGTATAGCCAGTTGTTGGTTCCGGTCCCTTCTCTGTTTCCTGAACACCACCTTAAGCATGTGGCTTATAGGGCAATAGTCTTGCTGTGTGGTAGGAATGTGGGCAAGCTTGAAGTTGAGTGTAAAAGAATAATACCATGAGCAGAGCTCAATGTCCTGTTCTGTAAGTGCAGAAGGCCAAGTGGTAATCAACAAACAGGAAAAGACTGGCTCAGGAGAACTGGAAACAAGAGGCCATAGTAAACTGGGAGAAAAGCCATTTGTGTTATATTCTGGCAAAGGATCTGAATTTGTAAATAAGGCTTAATGCAAATGAATCAGATTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCTCATGTGTGCGTATGTTTGGAAGAAATTTCACAAGGGAAAACAAATTTCTTCAGAAGAGCATTACATATTTGTTTAAAAGGCACGTGCACTGTATGCTATTTAACAGTTCCAGTTACAAGAATACTTGCATATATTGAAATAGTGCACTGTGATTTCTCTATAG
Seq C2 exon
GAATGCCATGCACTTTGCCTGCTTCTATGGACATTTAGAATTGGTGATATATCTCTGGAGGCGTGGTTGTGAGATTAATGTGTGTGACAATCATAACATCACACCCCTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-4931423N10Rik:NM_027635:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.041 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127962=Ank_2=PU(33.0=31.6)

							
A:
NA

							
C2:
PF127962=Ank_2=FE(40.4=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000028113





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000110150
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:27093800-27100084 
ALTERNATIVE
HsaINT0008638
(ANKRD26)
Human
(hg19)
chr10:27382729-27389013 
ALTERNATIVE
HsaINT0008638
(ANKRD26)
Rat
(rn6)
chr4:150612380-150616449 
LOW PSI
RnoINT0017740
(Ankrd26)
Cow
(bosTau6)
chr22:124814-124951 
Chicken
(galGal4)
chr1:24065048-24067097 
LOW PSI
GgaINT0109004
([1])
Chicken
(galGal3)
chr1:26091375-26093424 
LOW PSI
GgaINT0109004
([2])
Zebrafish
(danRer10)
chr25:3516218-3518643 
LOW PSI
DreINT0001018
(ANKRD7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"