HsaINT0008642 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27349441-27350171:-
Coord C1 exon
chr10:27350073-27350171
Coord A exon
chr10:27349470-27350072
Coord C2 exon
chr10:27349441-27349469
Length
603 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
ATGTCCCTTTTGGTTTTTAGAGT
3' ss Score
9.33
Exon sequences
Seq C1 exon
ATGTGTTTTATATACCTTCTTGCATGAGTGGATCAAGAAACTTTAAGATGGCTAAACTAGAGGATACAAGAAATGTAGGCATGCCAGTAGCCCACATGG
Seq A exon
GTATGGAAAAAAAATGCGTATTTTTGTTAACTGTTATTCTACAAGTGTATATCCAAGCTGATCAATTCAGAACACTTTCTCTGATGAGAAATAAGTTATATATCCAAGTAAAGTGGCATCATAACTGTGTGCTTCCTAAATTACAGGACAAGTTGAAGAACATGATAAATACTTGTAGTATAATGGTATAAATGATTCTGATGTGTTGCATTAAAGATATGCTGTCGCATTTTACCATCAGCCTTGACATTTCTCCTCTCAGGGTCATGATTTGCTCCTCTAATTAAAGATTACTTTTCTCCACATCGACCAGCATGCTCACATTGGTATATGTGCACTTTTCTATTTTAGTTATAGTCACTTGGAACATAATCTTACATTCAAATCATAACTGCATGTTTTATTAAACCTATATTCCTGTTTTTTTCTCCAGTATACTTCTGTCATGTTGCTGTCCTAACCAAAATAAAAAACATCCCAAAAATTAACATAATCATTTTCAAACCAAGCGTGATGATTCTGGTCATACTAACACTGCATGAATTTATGATTGACTTTGTCATATTTATGTATAATTGATTATATGTCCCTTTTGGTTTTTAG
Seq C2 exon
AGTCTCCTGAGAGATATCTTCACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)