HsaEX0004399 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27349441-27353010:-
Coord C1 exon
chr10:27352917-27353010
Coord A exon
chr10:27350073-27350171
Coord C2 exon
chr10:27349441-27349469
Length
99 bp
Sequences
Splice sites
3' ss Seq
TATTATGTATTATTTCTTAGATG
3' ss Score
8.56
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
AGTATCTCTGAGAATTTTCCACAGAAGTATGTTGATCCTTTAGCTGGGGCTGCAGACGGAAAAGAAAAAAATATAGGAAATGAACAAGCAGAAG
Seq A exon
ATGTGTTTTATATACCTTCTTGCATGAGTGGATCAAGAAACTTTAAGATGGCTAAACTAGAGGATACAAGAAATGTAGGCATGCCAGTAGCCCACATGG
Seq C2 exon
AGTCTCCTGAGAGATATCTTCACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'18-19,'18-17,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.750 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTGAGAATTTTCCACAGAAGT
R:
TTCAAGTGAAGATATCTCTCAGGAG
Band lengths:
119-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)