HsaEX0004399 @ hg38
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27060512-27064081:-
Coord C1 exon
chr10:27063988-27064081
Coord A exon
chr10:27061144-27061242
Coord C2 exon
chr10:27060512-27060540
Length
99 bp
Sequences
Splice sites
3' ss Seq
TATTATGTATTATTTCTTAGATG
3' ss Score
8.56
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
AGTATCTCTGAGAATTTTCCACAGAAGTATGTTGATCCTTTAGCTGGGGCTGCAGACGGAAAAGAAAAAAATATAGGAAATGAACAAGCAGAAG
Seq A exon
ATGTGTTTTATATACCTTCTTGCATGAGTGGATCAAGAAACTTTAAGATGGCTAAACTAGAGGATACAAGAAATGTAGGCATGCCAGTAGCCCACATGG
Seq C2 exon
AGTCTCCTGAGAGATATCTTCACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'26-37,'26-35,30-37
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.711 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTGAGAATTTTCCACAGAAGT
R:
TTCAAGTGAAGATATCTCTCAGGAG
Band lengths:
119-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development