HsaEX0004406 @ hg38
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27061144-27064081:-
Coord C1 exon
chr10:27063988-27064081
Coord A exon
chr10:27061927-27062263
Coord C2 exon
chr10:27061144-27061242
Length
337 bp
Sequences
Splice sites
3' ss Seq
TCTGAGCATGTTTCTTCCAGAGG
3' ss Score
5.24
5' ss Seq
GGGGTAAAC
5' ss Score
2.63
Exon sequences
Seq C1 exon
AGTATCTCTGAGAATTTTCCACAGAAGTATGTTGATCCTTTAGCTGGGGCTGCAGACGGAAAAGAAAAAAATATAGGAAATGAACAAGCAGAAG
Seq A exon
AGGAGAAGAAACAAAGAGATGGAGAAATAGAAATTGTAGATATAAGATAACTATTGTTAAATGAAGAGGAAAGAAGTGCTGAGAATGTTCCATAAAAAGAATATAGAATGGGAAGAATCAAGACCACAGATCTGGAGATTACTTTTGCAAAAGAAGAGAGATCGTGAGTGGGGAAAGAGAAGAAAGAAAGAAGTTAGCTAAGTCATCTTGGAGTTAACGATGAGGAAACTTGAGAGAACTCATTTCAGATGGATTCATTGCATTTACACTCAAACAGACGATTAGATCATTTCTGCTCCAGAGATTATTGCAAGCAGGAGGGCATGCTAGAATTGGG
Seq C2 exon
ATGTGTTTTATATACCTTCTTGCATGAGTGGATCAAGAAACTTTAAGATGGCTAAACTAGAGGATACAAGAAATGTAGGCATGCCAGTAGCCCACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_MULTIEX3-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.938 C2=0.711
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000376087fB396
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTGAGAATTTTCCACAGAAGT
R:
CCATGTGGGCTACTGGCATG
Band lengths:
190-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development