HsaEX0004406 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27350073-27353010:-
Coord C1 exon
chr10:27352917-27353010
Coord A exon
chr10:27350856-27351192
Coord C2 exon
chr10:27350073-27350171
Length
337 bp
Sequences
Splice sites
3' ss Seq
TCTGAGCATGTTTCTTCCAGAGG
3' ss Score
5.24
5' ss Seq
GGGGTAAAC
5' ss Score
2.63
Exon sequences
Seq C1 exon
AGTATCTCTGAGAATTTTCCACAGAAGTATGTTGATCCTTTAGCTGGGGCTGCAGACGGAAAAGAAAAAAATATAGGAAATGAACAAGCAGAAG
Seq A exon
AGGAGAAGAAACAAAGAGATGGAGAAATAGAAATTGTAGATATAAGATAACTATTGTTAAATGAAGAGGAAAGAAGTGCTGAGAATGTTCCATAAAAAGAATATAGAATGGGAAGAATCAAGACCACAGATCTGGAGATTACTTTTGCAAAAGAAGAGAGATCGTGAGTGGGGAAAGAGAAGAAAGAAAGAAGTTAGCTAAGTCATCTTGGAGTTAACGATGAGGAAACTTGAGAGAACTCATTTCAGATGGATTCATTGCATTTACACTCAAACAGACGATTAGATCATTTCTGCTCCAGAGATTATTGCAAGCAGGAGGGCATGCTAGAATTGGG
Seq C2 exon
ATGTGTTTTATATACCTTCTTGCATGAGTGGATCAAGAAACTTTAAGATGGCTAAACTAGAGGATACAAGAAATGTAGGCATGCCAGTAGCCCACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTGAGAATTTTCCACAGAAGT
R:
CCATGTGGGCTACTGGCATG
Band lengths:
190-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)