BtaEX0003514 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17947039-17949733:-
Coord C1 exon
chr13:17949640-17949733
Coord A exon
chr13:17947685-17947783
Coord C2 exon
chr13:17947039-17947067
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACTTATGCATTATTTTCTAGATG
3' ss Score
9.13
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
AGTATCTCTGAGAGCCTTCCACAGAAGTATGTGGATCTTTTATCTGGAGCTGCTGGTCAAAGAGGAAAAAATACGTTAAATGGACAAGTAGAAG
Seq A exon
ATGTGTCTTATATACCTTCTTGCATGATTGGATCGAGAAACTTTAAGATGGCTAAACTAGAGGAGCCAAGACATGTAGGCATACCAGTAGCCCACATGG
Seq C2 exon
ATTCTCCTGAGAAATATCCTAACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'12-13,'12-12,14-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.559 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGAGAGCCTTCCACAGA
R:
CTTCACGTTAGGATATTTCTCAGGA
Band lengths:
119-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development