MmuEX0005067 @ mm9
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118489865-118493001:-
Coord C1 exon
chr6:118492908-118493001
Coord A exon
chr6:118490469-118490567
Coord C2 exon
chr6:118489865-118489893
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACATGTGCGTTATTTCTTAGATG
3' ss Score
8.08
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
AGTATCTCCGAGAGTGTGTCACTGAAAGACGTAGGTCACTTCTCTGGGACTGCAGATCAAACGGGAAAAAGGAGAGCACATGGACAGATAGAAG
Seq A exon
ATGTGACTTATATACCTTCTTGCATGAGTGGATCAAGAAGCTTTAAAATGGCTAAACTAGAGGAGTCAAGAAATGTAGGCCTTCCGGTAGCCCACATGG
Seq C2 exon
AGGCCCCCAGGAAATATGCAATCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.706 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCGAGAGTGTGTCACTGA
R:
TCCATGATTGCATATTTCCTGGGG
Band lengths:
119-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: