MmuEX0005062 @ mm9
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118489865-118490567:-
Coord C1 exon
chr6:118490454-118490567
Coord A exon
chr6:118490271-118490326
Coord C2 exon
chr6:118489865-118489893
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTTGCAAATTATAGGGC
3' ss Score
5.92
5' ss Seq
GGGGTGCTG
5' ss Score
-2.97
Exon sequences
Seq C1 exon
ATGTGACTTATATACCTTCTTGCATGAGTGGATCAAGAAGCTTTAAAATGGCTAAACTAGAGGAGTCAAGAAATGTAGGCCTTCCGGTAGCCCACATGGGTATGGAAAAAAATG
Seq A exon
GGCAAACTGAAAACCATGATGAATGCTTGTAGTATAATGTGAAAAACCATTCTGGG
Seq C2 exon
AGGCCCCCAGGAAATATGCAATCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'15-14,'15-13,16-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=1.000 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTTATATACCTTCTTGCATGA
R:
ATTGCATATTTCCTGGGGGCC
Band lengths:
135-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: