RnoEX0009608 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150589688-150594534:-
Coord C1 exon
chr4:150594441-150594534
Coord A exon
chr4:150590292-150590390
Coord C2 exon
chr4:150589688-150589716
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACATGTGCGTTGTTTCTCAGATG
3' ss Score
8.85
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
AGTCTCTCCGAGAGTGTGTCACTGGACGGCGTAGCTCCCCTGTCTGGGACTGAAGATCACACAGGAAAAAGGAGAGCGCGCGGACAGATAGAAG
Seq A exon
ATGTGACTTATATACCTTCCTGCATGAGCGGATCAAGAAGCTTTAAGATGGCTAAGCTAGAGGAGTCCAGAACTGTAGGCATTCCAGTAGCCCACATGG
Seq C2 exon
AGGCCCCCAGGAGGTGTCCAATCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.794 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCTCCGAGAGTGTGTCA
R:
ATGATTGGACACCTCCTGGGG
Band lengths:
119-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]