HsaINT0008645 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27337730-27342319:-
Coord C1 exon
chr10:27342249-27342319
Coord A exon
chr10:27337909-27342248
Coord C2 exon
chr10:27337730-27337908
Length
4340 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
GTATCAAACTTTCATTAAAGGTT
3' ss Score
6.29
Exon sequences
Seq C1 exon
CTGAACATGACTTAGAAGTAGCATCAGAAGAAGAGCAAGAAAGGGAAGGGAGTGAAAATAACCAGCCACAG
Seq A exon
GTATTATATATTTTTAAAAATTTCTGGTTTAATATTGTTTTCTTTGCTTTAATGATGTAACATAGTCCAAATGAAATTACTTTTCAGACTAGCCTTTTAGAATCAATAGATCATCATTTAATATTTAGTATTAAAAACGTTTTGACTAGTTAAAATGTTCTTAGAATGTGTAGTAACCTATAGCTAATCTTTTGTTTTTGTTTTTGTTTTTGTTATAGTTAATCTTTACCCTTGGAATTGAAGCCAGAAATTTCCTGAGTATTGTTTCCTCTTTCATTTTTATAACTTCCTTATATGATAAAGATGGTAACATCAAATATTGAATCATATTATTAAGCAGTAGAAATTATGAACATTTTAACACTGATGGCCACTGAGTTGGATTCATCTTAAAGGAGTAATCATTCCCAGTGGTTCAGGATTTACATTCTTATATTGCTGGTCACTGATTCCAAGGTTAAAGATTTATTCTGCCTTGTGATCCCTGTTGATTTCAGTGTCTACATTCAGGGAAAGAATGAGGTCAGAAAATCAACCCAGTTATTAAGAGAATCATTCCTTTCAGAATGGGATCTTTCCATTGTTAGGATATACACAATAACTTTCTGATTATTTCAGTCTAGGAAATCAGTAAATATTATAGAATTTTTAAATCCACTATTAATGAACCTTAGGATATTTAAGAATTAGACTTAAGTCTTATATAGTTTATACAGATGCATAACACCATATTATGGTATATAATTTCAATTAAAATGTAAGAGTTAACTTTTCTTTCTGATTGGTGTTTATTTTGGCTCCTAATAATTTAAACTTTCCCTACTCTCCAGTTAGAAATCTTTACAAAAAGTACTTAAATGCACTGTAGGGGCTCAGTATTTGAGGTATGGTAAGGTAAAATCTTTTAAAATGAGGATGCCTTTATAATGCTACAAATCATCTGCTAATTTATTTTTGGTAGATTTAACACATAATGAATTAAGTTTAATCCAAAGGAACAGTGATAAACTTAACTTTGCTGGTTCATGTTTTTCTCCTATTTTAGGCTAAGGCAAATTAGTTTTTACTTCTTAGTTACAATCCAGTGATTTGGGAGTAACTAAACATAGACTAAGTTTAACAGTTGAATTTTAATTATTTCCTAATTTTTCTTTGTCCGTACTTGATTACTCAAGGATAAAGTTATTTTAAAAACATGCACCCTGACAGAAAAGACATCTGAAAAACAAAACAAGCAAATTAATCGTCCACTTTCATGTCTGCAAAAGATGTCTCAAGAACCAGAACTGAATAAGGAGTGTGATAGAGAGGATGTATCTGTATATTCAGGACTTCCTTGTGTGCAAAATGATGAAGAAATGTGGACCAAACAAGGCAAATTAGAGTGGAAAAATAACTTAAAACTCATCACAAATGAGTTAAAGCAGAGCTGTGGTGAAACTTGTGAAAAATACAAAATTACTGCTTCTCCTGGGGAAGAGTCACTACATGATAACTCTAAAGGAGGCACAAACTTAAAGGAAATACCTTCTTCTTTGACAAATAATATACTTGATTGCGATGAAAAAGATTCTCCTGTCTCTGTACTATTCCAGGCATTGCCTGAACAAAAAGTACTCAGTCTCGAAAATGGCTTTTCATTTCCTTCATACTCTGGGTCCCCAGAATATGCTTGCCAGTCATCTTCTAAGCCTTATTTAAATGAAAATAAATTAGGCCATGAAAATGTTAACAAACCAGACACTGAACATGTTTTTAACACAGATGAGAATTTTTATAATGATACAGAAAATAAAAAAGTAAGGAACCCAGAAGTAGTTACAGGTGTAATGAAAGAAGAGTTTGATAAGACAAAAAATATGAACCGAAATACCACTAACTGGAAATTAGACATCAGACGTGTGCCTCAGTATAGTGATCCAAAAAGACCTTTTGATTTGATCTGCTCCAAAGAAATGAATCATATGTTTCACATAAAAAGGCATAGTATTTCTGCTGGTACAGACGCTTACAAGAAAACAAAACCAATACAGAACTTGTTCCAGAAGCCATTATATGATCATTGCAGTGCTAATAACTATAAAAGCATGGAACCTGAATTAGAAAATGTGAGGTCTTCTCCACCACGTGGTGACAGAACATCAAAAGTATCTCTAAAAGAAGAATTACAGCAAGATATGCAAAGGTTTAAAAATGAGATAGGCATGTTAAAAGTAGAGTTCCAGGCTTTGGAGAAAGAAAAAGTCCAACTTCAAAAAGAGGTAGAGGTTTGCTTGCTGCTACTCTTTGTTTTTTTCTCTATCAATTATTTGATCCATTCTGATTTTCTGCTTATGAAGAGCTCATGTATAAAATGGTGTTACCTAAATATGTAATTGTGTTTAGAAATAGATATTATTCTGCTATCTAAGTAACAAGAGTTAAGGAAAACATTCTCAAAATCTTTGTTCCTTAATCAACCTAAGAAGTCTATCAGTCTTCCAAGTGACATATGGACTGGGAAACTAATTTAGCCATATACCGTGTGACCTTGTGAACCAGTATAAGCATAAAGGAAATTGCCTTATGAAAGGTAATAAGTGCTAGGGTTTTTTTCCCTATTTTCTTAAAGATGAATTTCTTTTATTTAAACAACAACATGGCAATACAGTGGGAGAGAAGCAGTGACTGAGAAGAGATATAAAAATATATCTAGCCCTGAGTATTGTTAACAAATATTCCCAGCCAAAGGGATCTTTTTAATGTGCTTTCGTGTGTGTAAAGCTTATCTGTTTGACTCAAACTGTTGGAACTTATAATTCCATTCTGATCACTTTAAAGATTTTTGACAACAAATACATGTACTTTCACATATTTTTTAAAACACCAGTCAAATGTTTCTGTTGAACCAGACCTTTACATTATGTTGTTTAATAAAGTATGATAAGTTTGGGCATGTATACCCTATCAGTAGCATAAATCCTCAGCCAGAAATTTAGTATTTAACTCCAAAGTAGAAAGCTGAGTTCTGTACATTGAGTTGTAAAGATAAACAATAATCTGCAGATATTCTTCTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGATTCTTACTCTATTGCCCAGGCTGCAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTATCCTGCCACAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCACCACACCCGGCTAATTTTTGTATTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTAAACTCCTGACCTCATGATCCACGCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCAATATTCTTCTTTAAAAGTAAAAGCAGACGAGACTTCCCACACCCTGCTATGGCATTAAATTACTTTGCCAGTGTCACACTTAATTCATCTGATTAATTTGATGAATTTATCTGGTAATTTATCTGATTCAGCATTATGGAGTTATATCATCTCTTTTGGTGCCATAAAGTGCTAGATAATGCCACTTTAGGAGCTCTGGATGGATCATTTAATCTTTCTTGTTTTAATCTGGATGGATCATTTAATCAGTAGATAATGAGGTTAACTTAGATAATTAATACTTATACTATATATCCTCCAGCTATAAAATTTTAGTTATTGAATGTGAAATTCGGGAAGCATCTCATTCTCCAGAATTCCACACCAGCAACTCAGCAGTTTCACTCTGTTCCTTATGTTGTGGCAAACCTTGGTTTCTGTATTTCAGTGAGCACCTTCACTTTGTTGATATCCCAGGATCCAAACGAAAAAAAGAATTATAAAAGACACTGGGGAAAAGAATATCTTAGTGCAGAAAGGGGGAAGATTCCTTTCTCTTCCTGGCTGCGTAGTGTAAAATCCAGGTGGTAAAAAGGCAGAAGAAGATGCATCTTGTGTCTTTGTCTTTTTATTTCTCTGTTTCTGCCAGTAAAATGGGGTGAAAATTCATAGTAGATAGTGAAGATTGGATGGGAATAAAAGCACAAAATTAAGAAGAGCCTTTGAAATTTTGGAAAATTCTGTTTTACCCAAACAGAAATGAAGCAGACTTTACAAAAATTTCGTTGATAAAATTATAATAATAGCTGATAATTATATAACAATTATGTATACAATGATCCCATTAGAGTAAGCAGAAAATATTTTTATTGGCTAAAGTTACCATAGTTAAACTGAGTCAAATGATAAACTCAATGAAAACAAAGAAATTATTATTGAATAAAGTAATAGCAATTCCTTAGTATCAAACTTTCATTAAAG
Seq C2 exon
GTTGAAGAAGAAAGGAAAAAACACAGAAATAATGAAATGGAAGTATCAGCAAACATACATGATGGTGCTACTGATGATGCTGAAGATGATGATGATGATGATGGATTAATTCAAAAAAGAAAGAGTGGAGAAACTGATCATCAGCAATTTCCCAGGAAGGAAAATAAAGAGTATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)