MmuINT0015542 @ mm10
Intron Retention
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118533315-118535143:-
Coord C1 exon
chr6:118535079-118535143
Coord A exon
chr6:118533467-118535078
Coord C2 exon
chr6:118533315-118533466
Length
1612 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
CTGTCCACTTTACATTAAAGGTT
3' ss Score
6.91
Exon sequences
Seq C1 exon
AGCCAGAATCAGTATCAAGAGAAGAACAGACAAGGCTCAGTGGCAGCGAGGACAGCCAGCAGAAG
Seq A exon
GTACGTGAATGTTGCAAGCCGGCCTGCGACTTACAAGGACCAGGTACACCAGGGAGGCAGGCTAGGGCTGAAAGAGACTTAGACAGCGAGAGGTTAATGGAGCCAAGACAAGATTCTGTTCAAAGCCCCCACCCCCTTATAAAAAGGGGAAGGCCCATCCCCCGCCAGTCCATTCTTGGTGTCTGGAGCCAGCCTGTAGGCGATGTGCAGAATTCCCATAGAAAAAGCCCAAGGTAGACATGTGTGTTGGTAACTGCAGCACCGAGGGGCAGAAGTAGCAGAGTGTGGGAGCTCAGTAACCCCACAACATAACCTTTGAACTATTCGCTGAGCCAGCATATAAAATACCTCCATCGCCTGGCAGAGAATCACAGCTCTGCAGTGAGGCCTCGGTACTGGGCTACTAGGTGATACGCTTTACCGTTCTAATTTGATGTATCGTCAGAACCTGGCAAATACCCTAAATGGCTTCATCCACCATCTTTATTGAACAGGAGACTGTATTAGAACTGGACTTAATACAAATGACTACACTGTTATAGTTTTATAATTGGAACTAATGTTGCTCTTTTTTCTAATCAGTATTTATTGACTTTGGCACTTAATAAAGTTTGCCTCCTCTCTAAAGATCATTTGGTGATCTTTAGAAAGAGGACTTAAGCTACTCTTTAGCGTGTGATGAGGTAAGGCTTTGTAACACTAAAAAACAAAACAAAACACGACCCTCGTAATCTGTGTTTAGTAAGTGTAGCACAGAGTCCAGTGTGGTGCAGTCAGTCAGTAGGCACGATGAGTCTGCTGGGTCACGGTGTCCACTGTACACTGAGTAAGTTAGCTTTTACTTCTTAGTTACAGTCCAGTGACTTAAAATTAGCTAAAGCCCTTCTTACTGGTAAGATCTCAACTGCTTTCTTTGTATATACTCTTTTATTATTTAAAAATAAAGTTCTTTTAAAAATATACAGCCTTACAGTAAGAACTCTTTTTAAAGATTTATTTATTTATGTTTATGGGTATTTTGCCTGCATGTACATTTGCACACCAGAAGAGGGCATCGGATCCCATTGCAGGTGGTTATGAGCCACCATGTGGGTTCTGGGAATTGAACTCAGGACCAATAGAAGAGCAGTCAGTGCTCTTAACCACCGAGCCATCTCTTCAGTCCCAGAAAGAACTCCTAAGAATAAAATTCTGTGTAACGTTTTCTTTCTCAATATGCAAAACGTGGGACTCGAGTGTCAAACGCAAATCCTGGCTAAACTGTCACGTGATAGAGATCAATGACAACTAAGAGCTTTTAAGAAAAGCAGGAATTCCTTTGCCATTGAATAATGACTTTTTTTTTTAAGATTTATTTTTATTTTATGTGTGGGTGTGTCTGGCCTGCATGTACATATGTTCACCCTGGTGCCTACAGAGGTCGGAGGAGTGCACTGGGTCCCTGCAGCAACAGGTCCAGATGGTTGTGAGCCACCACGTGAGTGCTGGGAACCAATCAGCGCTCTCGACCCCGGAACCTTCTCTTCAGCCCCTCCCACAGAAAGTCTTTTTTTTTTTCTTCTTCTTCTTTTTTTTTTAAATCAAGTCATCCTCTGTCCACTTTACATTAAAG
Seq C2 exon
GTTGAAGAAAAGAGAAAATACAAAAATAACGAAGCAGAACCCTCAGGAAATCTATACAGCGGTGCTGCTGACGGCGGTGCTGATGTAAAGCCACAGAGTGGAGACACTGAGAACCAGCAGTCTCCCCGGGAGGGGAGTGAGGGACGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827:ENSMUST00000112830:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAATCAGTATCAAGAGAAGA
R:
CTGCCACGTCCCTCACTCC
Band lengths:
217-1829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types