RnoINT0017747 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150583445-150585438:-
Coord C1 exon
chr4:150585389-150585438
Coord A exon
chr4:150583597-150585388
Coord C2 exon
chr4:150583445-150583596
Length
1792 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
CTGTTCGCTCTTCATTAAAGGTT
3' ss Score
8.49
Exon sequences
Seq C1 exon
AGCCAGAAGAGCAGACAAGGCTCAGAGGCAGTGAAGACAGCCAGCAAAAG
Seq A exon
GTACGAGACAGCTGAGCCGCCAGTTTACTGTGCTCTTGCTTTAGTAAGACAGCATGTTGGATGAGTATCATTTGGACCAGCCTTTCTTAGGATCAGTAGATGATAATTTAATATTTGATTTCAAAACAGGTTTTATTTTTAATTCCATGTATATGTGTATGGGCAAGTGCTTATGTGTGCAGAAGCCAGAAGAGGGTAGAGGACCCCCTTGGAGCTAGAGTTAGAAGCAATTATGAGTTCAACAGGGTCTGAGAACCAAACTCACTTCTGCAAGAACAGCATGTGCTCTAAACCACTGAACCATCTCTTAGCCTCTAATACTTCATTTTAACAACATTATTATCGAGTTATAAAATTTGAAATAGAGCCAGGGAGATTCGTCCTTGGGTAAGAGTGCTTGCCGTATAAGAATCTATAGACCTGAGTTTGAATCCCCAACATTCATATAGAACAATCCCAAGATGGGCACGTGTGTTGGTAACCGCAGCACTGAGAGGCAGAAGTAGCAGAGTCGGGGAGCTCAGTAACCCCACGACATAACCTTTAAACTATCTTCTGAAGCAGCACATAAAATAACCTCCATCACCTGGTAGAGAGTCTCAGCTCTGGAGGGAGGCCTCGGTATTGGGGTACTGGGCAATACGGATGATCATCATCAGAAACTGGCAAATACCCTAAGTGGCTTCATCCGCCATCTTTACTGAGTAGGAGACTGTATTAGGACTGGACTTCATATAAATGACTATACCGTCATAGTTTATAATTGGAATTAATGTTGATCTTCTTTCTAATTGGTATTTATTGACCTTGGCACTTAATAAAGTTTGCCTCCTCTCCATTTGGTGATCTTTAAGAAAGGAACTTATTCTACTCTAATGTATGATGAGGTAAGCCTTTGTATCACTAAAAACAAAACACAGCAAAGCCTTCTAATGTGGTTTTAGTTAAGTGTAGCACTCACTTGAGGGCAGTGCAAACAAACAATAGATCGTTAAGTCTGTGGTCCCTGTATGGTTGCAGACTGGGGTAAGTAAGTTAGTGTCTACCTCTCAGTTACAGGCCAGTGAGTTAGAAACAGCTAAAAACATTGGTAAAATTTCAATTGTTTTCTTTGCATATACTCTTTGATTATTTAAAAATAAGGTTCCCTTAAAATATACAGCCTTTCAGGAAGAACTATTTTTTTAAAGATTTCTTTATGTTTATGTATATTCTGCCTGCATGTACATTTGCACAGAAGAGGGCACCAGATCCCTTACACATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTCTGAGCCACCTCTCCAGCCCCAGAAAGAACTCTTGAGAATAAAATTCTGCACATCATTCTTTTTTCTCAATATCAAAACATGGGACTGGAGTGTCAGATCCAAATCCTGGCTAAACTGTCACATGGTAAAAAAAAAAAAAAATCAATGAAAACTAAAGGCTTTTAAGGAAAGAAGAATTCCTTTTCCATTGAATAATGACTTTTTTAAAGGTTTAGTTTCCGTGTGGGCCTGCTTGGCCTGCATGTACATGTGTTCACTAAGAGTGTGCCTGGTGCCGACAGAGGTCAGAGGAGTACATTGGGTCCCCTGGAGCACGAGGTACCGATGGTTGTGAACCACCCTGTGAGAGAACCAAATCAGCGCTCTTGACCGTGGAACCATGTCCTCAGCCCCTCCCACAAAAGTCTCTATTATTTTGAGAATCCAGTTATCCTTCTGTTCGCTCTTCATTAAAG
Seq C2 exon
GTTGAAGAAAGGAGAAAGTACAGAAATAACGAAGCAGAGCCATCAGGCAATCTGTACGCCGGTGCGGCTGACTGCGCTGCTGACGGAAACCCACCGAGGGGAAACACGGATGACCTGCAGTTTCCCAGGAAGGGGAGTGAGGGACATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAAGAGCAGACAAGGC
R:
CCATGTCCCTCACTCCCCTTC
Band lengths:
198-1990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]