HsaINT0012419 @ hg19
Intron Retention
Gene
ENSG00000141748 | ARL5C
Description
ADP-ribosylation factor-like 5C [Source:HGNC Symbol;Acc:31111]
Coordinates
chr17:37318964-37321392:-
Coord C1 exon
chr17:37321332-37321392
Coord A exon
chr17:37319112-37321331
Coord C2 exon
chr17:37318964-37319111
Length
2220 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
GCCCACTCCTACCTCCCCAGCTT
3' ss Score
6.02
Exon sequences
Seq C1 exon
AGCACACGGTCATCATCGTGGGACTGGACAATGAAGGAAAGACCACCATTCTCTACCGGTT
Seq A exon
GTAAGTGACTCTCGGGCGGGGAGGGTAGAGAGCTGGGCCTCCCACCAGACTGACAGGCAGGGGGACCAATCACTGGAGCTCTTCCCTGGGTTCCCGGGCTCCTCTGTAGTCCGGAGGAGCGATTGGGCACGCTGCTTGGACCTTCCTAGTACTGCGGCTCCTCGGTCTGGCATTCAAATCCTGCACCGTACAGGCAACCCTAGCTCCCACTGCTTTCCTCCATCTTCCCGGGGGCCCTGCCAAACCCAGCTCCAGGCCTGCCAAGTGTCCCAAACTGCCTCCCTGCTCTTCGCTCCCTCTAGCGGCAGGTCCCTCCTTTCTCACCCCTGTCCCCTCTGCCAGTTAACTTTCTTCCCCTTCTTCAAACCCAAAGGCTCACTGAGGCTCTGTAGCTCCTGGTCTAGCAAGCCTGGCACATATGGGTGGTGCTGAGTAAATACCGATCGCAGCTTTCCCCGATATTCGCTCTCTGGATGGCACCTCTCCCATTTTACAGCCTCCAAAGTACTTTACTTAGGAGAAGCTTTTCCATGAAAAAGTAATACATGTAATGATTTTAAAAAATTATAAAGGAAAATTTCAAACAATGGAGGAATACACGGTGAAAAGTAAGTTTCCTTCTTGCCTCTGGCTCCTAGTTTTCCTCCTATTGTAACTTTGCGTAACTTTTCAGAAGCATTATTTACATATAAAAGCATGTGTATATTTTCTATGTCACTTTAAACAAAGCACCTCTCTGATGTCCCTCACTGTGTCTGTCTCATTTTTCTAAACTCTTGCTCCTCAAAGTGTGGTCTACAGACCAGTCACACAGGCATCACCTGAAAGCTTATTAGGAATGCAAAACCATGGCCGGGCGCTGTTGCTCTCAAAGTGCCTGTAATCGCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGATCAGGAGTTCAAGAGCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAACAACAACAACAACAACAACAACAAAGGGCTGAGCAAGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCTGAAGTGGGTGGATCTACCTGAGGACAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAAAATATAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCCCACCTACTCTGGAGGCTGAGGAAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGACTGCGCCACTGTACTCCAGCCTGGGCGACAAAGGGAGGCGGAGGTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAACCTGGGCGACAGAGAGAGACTACATCTCAAGGAAAAAAAAAAAAAAAAAGCAAAACTGTGGCCGGATGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGTCCAAGGTGGATGGATCACTTGAGGTCAGGAGTTCGAGACTCGCCCAGCCAACATGGCGAAACCCCGTTTCTACAAAAATACAAAAATAAGCCTGGCGTGGGGGTGTGCTCCTGTAATCCCAGCTACTCAGGAGGCCGAGGCGGGAGAATTGCTTGAACCTGGGAGACATGATCGTACCTACACTCCAGACTGGGCGACAGAGTGAGACTCTGTGAAAGAAAGAAAGAGAGAGAGAGAAGGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGCAAAAGCCTGGACCCCTGCCCAGACTCACTGGGTCAGAATCTGCATTTTGACAAAACTCTCAGGTCATTCAACTGCATATTAAAGTTTGAGGAGGCTGGGCTCTGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATCTCTTGACAGGAGCCCAAGGTCAGGAGTTCAAGGTAAGCCTGGGCAACACAGTGAGACCCTGTTTCTATAAAAAGAAAAAAAGAGATAAAGTTTGAGGAGCCTCCTCTAAGATGTTTCCCTTCTCTGGGGTCCAAGCCAGGGCAGGGCTTAGTCTCACTCCTGTCTTCATTCCCCAGGGCCCAGCACGGGGCCTGGCTCCGAGCAGGTGTTTGGTGAACCTGGGTGGACTTGTTCTGAGTTAGATTCAGACTGCTTTGGGAGTAGAGCATTTGGGGGCCAGAGTTGGGAGTAGGCTGGACTGAGCTCTTGGTGCCCACTCCTACCTCCCCAG
Seq C2 exon
CTTGACCAATGAGGTGGTCCATATGTGTCCCACCATTGGCAGCAACGTGGAGGAGATCATTCTGCCGAAGACCCACTTCTTCATGTGGGACATAGTGAGACCTGAGGCTCTGAGCTTTATCTGGAACACATACTACTCCAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141748-ARL5C:NM_001143968:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=FE(11.9=100),PF0002516=Arf=FE(11.4=100)
A:
NA
C2:
PF128032=G-7-MTase=FE(29.2=100),PF0002516=Arf=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)