HsaINT0015061 @ hg19
Intron Retention
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase, H+ transporting, lysosomal V0 subunit a1 [Source:HGNC Symbol;Acc:865]
Coordinates
chr17:40652725-40653322:+
Coord C1 exon
chr17:40652725-40652941
Coord A exon
chr17:40652942-40653214
Coord C2 exon
chr17:40653215-40653322
Length
273 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TCCTTCTTCTTACTCTGCAGAAA
3' ss Score
10.95
Exon sequences
Seq C1 exon
CTATTTCAAGAAGCCCCTGAATATCTACTTTGGATTTATTCCTGAAATAATCTTCATGACCTCTTTGTTTGGCTATTTGGTTATCCTTATTTTTTACAAGTGGACGGCCTATGATGCTCATACCTCTGAGAATGCACCAAGCCTTCTGATCCATTTCATAAACATGTTCCTCTTTTCCTACCCAGAGTCTGGTTATTCAATGTTGTATTCTGGACAG
Seq A exon
GTACGTCAGCCCAGAGGCAGACTGTCTGAGATGATTATACTTGATCAGGAAGCCAGATGTTTCTCTGACCCTAAAAAATTTATAACTGCCCTTCTATGGGACAATTCTAGGGCTTTGCCACAAAATGTGATAATTATTTTGAGAAATTGGATAGTGTTATTCATAGATTAGTAAGAAAGTACTGTTGGGGGAAATTTGTGCCATATTTGGAAACTGCGTATGTGATCGGTAGACTTTTATATGATGTACCTTGTCCTTCTTCTTACTCTGCAG
Seq C2 exon
AAAGGAATTCAGTGTTTCCTGGTAGTGGTTGCACTACTGTGTGTACCTTGGATGCTGCTGTTTAAACCATTGGTCCTTCGCCGTCAGTATTTGAGGAGAAAGCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627-ATP6V0A1:NM_001130020:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(10.6=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCCTGAATATCTACTTTGGA
R:
TACTGACGGCGAAGGACCAAT
Band lengths:
295-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)