HsaINT0015751 @ hg19
Intron Retention
Gene
ENSG00000224470 | ATXN1L
Description
ataxin 1-like [Source:HGNC Symbol;Acc:33279]
Coordinates
chr16:71879899-71881974:+
Coord C1 exon
chr16:71879899-71880007
Coord A exon
chr16:71880008-71881912
Coord C2 exon
chr16:71881913-71881974
Length
1905 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTCCTGTTTCTATCTTCTAGGCT
3' ss Score
11.31
Exon sequences
Seq C1 exon
GGGGGGCGCTGGGTGTGGGGCGGCTCCGGGGCCGGGGATGGCGGCGGCCGCGGTTGCGGCGGCTCCGGGACGAGTGAGTGGATCCTGGGAAGCGCTGTGAAATGGGCTG
Seq A exon
GTGAGTGTCCCTGGAAGTGGTGGCCGCCGGGGCCAGGCAGGCCTGGGGTCGGTGCTCCGGAGGAAGTGGCCCTCAGGAGCCCGTTGCTCCGGCGGGCCGGGGCCCATGAACCGTGGACAGACGGAGGGGAGAGGCCGCACCTAGACCCCCTCGCGCTTCTCTCTGGCCTGTCCTGGAAGGTGGCCTCAGGCCCCGGCGCCCCGGAGGCTGTGTGCCTGCGAGCCAAGGTGTCCGAGTCTGTGGGGCGGGAAGGGCCCCCAAACAAGGAAGCGTCGCCTGCAGGGCCTCGCCCCTGCCCCCTTGGTGAAGGGTGGACCCCCTACTCTCTAAACGCAGAATTCCCAATTTCGAGCCCTACCCTTGTTGGATCAAGGATTGCGGGACCACTGGGAGCCATAACCGTAGTCTCTGACAAGCTTCTCCCTTTCTGTCGGGCGCACCTCTCGCCCGCAGAGAATTTGGGTCTCCAGCTGGGTTCAGCCCCTTGATTCCGACCCAAGCGTGATGAGGAGCTTGGTTCCGGGCTCTGCTAGCAGCGTTGGCAACTCTCCTGAACAGCCTGTTAGCTCGGTTGGGGTCACAAGCTGCGTTTTCCCTTTGAGATGCTCAGTGAGGTTCTCGAGAGGCGGAGGTTTCGGATTCTTAAGTGTGTTTTGCGTTGTGGGAACCTGGCGCACAGGCTTGGCTCTTTGTTTTCCTTTCTGCAGACCTTTTGCCTCTTTCGGTCCCTTTACTAGCCTGTGTTTGCTAACTTCTCGGTGACCTGGAGGCAGGTTTTCTTTAAAGTTTTCGTTACAGAAAGCAAGGATCATTTTGGGATTGAAGTGTGACCCCAGTTTCTGTTGGGAATGAAGAAGAAAGCAAGCTGCTTTTCAGTTATTAAAGCTGCTGGTGGAGAAAAGAGTCATTATTTATGCCACTGTGTAATAATATGTGTTTGTGGAATTAGGAATTTGTTTTCCCACTGTGTTTTCCTATCCTTCCACCTTTTGTGTACACCTGCACCTTGCCAATCTTAAGAGAGAAATGTTGCATTCGGTTTGGGTTGAGGCTTAGAGTGTTCTATAGGACTTGGACAGGATAGTCAGTTTCTCAGAGCACTCACTCATCTGTACTGCCTTCTCTGTTTTCAGAGGTTAAGGCTCCATTCTTTCTCGCTTTGCGTTTCTGGCAAGTGTAGATTCACATAGTGATGGTTTAGTGGTAGTTTTGTTTCACCAGTGTTAGCCAGCTGAGGACCAAGGCAATATTTTCAGTTTCTTTCATACCTGATTCAGCACTTGGTATACTGTCACTCAGAAAATTTTACATACACACACACATATGCTCATTTTTTTTTAACCCTGAAAATCTCTTAATAAGTCTTCTCCTTGAGTGACTCCCCCCTGACCTCTTTTTCTGCCCCAGAAACATAAATAATTGTTCTTTTTCATCTACTGCTGCTTTTTTTCATTTAAATAACTCCACATTTATGTTTTCATAGGCCCAGAATAAAGGGGAAATCCATAGAGTTGATTTTTCCTGCTTCCCATTGTTCATATGGGAACAGTGTTAAAGCTTCCATTTTTATTTGTGCGTTTATCTGAAATTTGGATTGGAGCAAATTTAACCTTTGGGGAACAGGCACAGGTAGATGTTAGGGAAATGATGTTACGGAAAACCAATGAAATTTGATACATGGAAATTTTTTTTCAGGGATGTCTTCTTACAAGTTGGAGCATTAGAGGTGTTTTTCTCTCTGTTCAACTGCCTGGGCACTCTGGGTAAATGTACTGTTTACCTGTGGAGAAGAAGATGAGGCAAGGACGTGTATACTCTAATGCTTTGGAATTACCTTTCATGGTGACCCTGGGGAGAATTAGAGGTCAGGCAGCCGCTTACTCCATTCCTGTTTCTATCTTCTAG
Seq C2 exon
GCTCCCGAGCCAGCCGGGAGGACACTTACTACAGCTGCTCAGAAGCACCACTGGAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000224470-ATXN1L:NR_024612:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)