HsaINT0015751 @ hg38
Intron Retention
Gene
ENSG00000224470 | ATXN1L
Description
ataxin 1 like [Source:HGNC Symbol;Acc:HGNC:33279]
Coordinates
chr16:71845991-71848071:+
Coord C1 exon
chr16:71845991-71846104
Coord A exon
chr16:71846105-71848009
Coord C2 exon
chr16:71848010-71848071
Length
1905 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTCCTGTTTCTATCTTCTAGGCT
3' ss Score
11.31
Exon sequences
Seq C1 exon
GCTGTGGGGGGCGCTGGGTGTGGGGCGGCTCCGGGGCCGGGGATGGCGGCGGCCGCGGTTGCGGCGGCTCCGGGACGAGTGAGTGGATCCTGGGAAGCGCTGTGAAATGGGCTG
Seq A exon
GTGAGTGTCCCTGGAAGTGGTGGCCGCCGGGGCCAGGCAGGCCTGGGGTCGGTGCTCCGGAGGAAGTGGCCCTCAGGAGCCCGTTGCTCCGGCGGGCCGGGGCCCATGAACCGTGGACAGACGGAGGGGAGAGGCCGCACCTAGACCCCCTCGCGCTTCTCTCTGGCCTGTCCTGGAAGGTGGCCTCAGGCCCCGGCGCCCCGGAGGCTGTGTGCCTGCGAGCCAAGGTGTCCGAGTCTGTGGGGCGGGAAGGGCCCCCAAACAAGGAAGCGTCGCCTGCAGGGCCTCGCCCCTGCCCCCTTGGTGAAGGGTGGACCCCCTACTCTCTAAACGCAGAATTCCCAATTTCGAGCCCTACCCTTGTTGGATCAAGGATTGCGGGACCACTGGGAGCCATAACCGTAGTCTCTGACAAGCTTCTCCCTTTCTGTCGGGCGCACCTCTCGCCCGCAGAGAATTTGGGTCTCCAGCTGGGTTCAGCCCCTTGATTCCGACCCAAGCGTGATGAGGAGCTTGGTTCCGGGCTCTGCTAGCAGCGTTGGCAACTCTCCTGAACAGCCTGTTAGCTCGGTTGGGGTCACAAGCTGCGTTTTCCCTTTGAGATGCTCAGTGAGGTTCTCGAGAGGCGGAGGTTTCGGATTCTTAAGTGTGTTTTGCGTTGTGGGAACCTGGCGCACAGGCTTGGCTCTTTGTTTTCCTTTCTGCAGACCTTTTGCCTCTTTCGGTCCCTTTACTAGCCTGTGTTTGCTAACTTCTCGGTGACCTGGAGGCAGGTTTTCTTTAAAGTTTTCGTTACAGAAAGCAAGGATCATTTTGGGATTGAAGTGTGACCCCAGTTTCTGTTGGGAATGAAGAAGAAAGCAAGCTGCTTTTCAGTTATTAAAGCTGCTGGTGGAGAAAAGAGTCATTATTTATGCCACTGTGTAATAATATGTGTTTGTGGAATTAGGAATTTGTTTTCCCACTGTGTTTTCCTATCCTTCCACCTTTTGTGTACACCTGCACCTTGCCAATCTTAAGAGAGAAATGTTGCATTCGGTTTGGGTTGAGGCTTAGAGTGTTCTATAGGACTTGGACAGGATAGTCAGTTTCTCAGAGCACTCACTCATCTGTACTGCCTTCTCTGTTTTCAGAGGTTAAGGCTCCATTCTTTCTCGCTTTGCGTTTCTGGCAAGTGTAGATTCACATAGTGATGGTTTAGTGGTAGTTTTGTTTCACCAGTGTTAGCCAGCTGAGGACCAAGGCAATATTTTCAGTTTCTTTCATACCTGATTCAGCACTTGGTATACTGTCACTCAGAAAATTTTACATACACACACACATATGCTCATTTTTTTTTAACCCTGAAAATCTCTTAATAAGTCTTCTCCTTGAGTGACTCCCCCCTGACCTCTTTTTCTGCCCCAGAAACATAAATAATTGTTCTTTTTCATCTACTGCTGCTTTTTTTCATTTAAATAACTCCACATTTATGTTTTCATAGGCCCAGAATAAAGGGGAAATCCATAGAGTTGATTTTTCCTGCTTCCCATTGTTCATATGGGAACAGTGTTAAAGCTTCCATTTTTATTTGTGCGTTTATCTGAAATTTGGATTGGAGCAAATTTAACCTTTGGGGAACAGGCACAGGTAGATGTTAGGGAAATGATGTTACGGAAAACCAATGAAATTTGATACATGGAAATTTTTTTTCAGGGATGTCTTCTTACAAGTTGGAGCATTAGAGGTGTTTTTCTCTCTGTTCAACTGCCTGGGCACTCTGGGTAAATGTACTGTTTACCTGTGGAGAAGAAGATGAGGCAAGGACGTGTATACTCTAATGCTTTGGAATTACCTTTCATGGTGACCCTGGGGAGAATTAGAGGTCAGGCAGCCGCTTACTCCATTCCTGTTTCTATCTTCTAG
Seq C2 exon
GCTCCCGAGCCAGCCGGGAGGACACTTACTACAGCTGCTCAGAAGCACCACTGGAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000224470:ENST00000427980:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development