HsaINT0020291 @ hg38
Intron Retention
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80328665-80329109:+
Coord C1 exon
chr12:80328665-80328744
Coord A exon
chr12:80328745-80329050
Coord C2 exon
chr12:80329051-80329109
Length
306 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GCACCTTTGTTTCTTTGTAGGTA
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGTTGAAGGATGCTTGCCCTACTGCCCTAAAAATATGATCCTTGATGAGGTCACCCTCAAGTGTGTTTATCCACGAGACT
Seq A exon
GTAAGTGTGAACGTTGCTTAATTTACTCTGAAAAATTATACGCTTGCATATGTTTTTTCCGAGGCAAGTGGTTGTAAACAGAAGTTTTAAACAGACAATCAACTCTCATAAGATTATTCTTCAATGTCTCTTACATAGCTTTTTTTCCCTAATTACTTTTTAAATCATGTAGATCTTCCACTAACATCTCTCCTGCATTCTTTTTCCCAAAACATTTTCCTTGAAGCTAAAGAGTCCTCTATGAAATATGTGGGTCTAATTTTATGCAAATACAGTTTTATAAAGAGCACCTTTGTTTCTTTGTAG
Seq C2 exon
GTATACCTGTGATTCCCACAGAACCAACATTAATGCCACCAGCTAAGCCAACTGTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899:ENST00000547103:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=FE(48.2=100)
A:
NA
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development