RnoINT0106121 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51900282-51900838:+
Coord C1 exon
chr7:51900282-51900361
Coord A exon
chr7:51900362-51900796
Coord C2 exon
chr7:51900797-51900838
Length
435 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GCATCTCTATTTATTTGCAGGCA
3' ss Score
7.81
Exon sequences
Seq C1 exon
GGTTGAAGGATGTTTACCATATTGCCCCAAGCATATGATCCTGGATGAGGTGACTCTTAAATGTGTTTATCCAGAAGACT
Seq A exon
GTAAGTATGGACCTTGCTTCATTTACTGTTAAAAATTAAAAGAACGCTTGCCTAGCAAGTGCAAGGCCCTAGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAGAAAAAAAATTAAAAGAAAAATGGATACTTTTTCCCTGAGGCAAATGGTTACAATTAGAAGTTTGAGACAGTGAATAATAACTCATTTCAATCTCCCTTCCATGGAACTAAAACAAACAAACAAACAAAAAAACCCAACAACAACAAAAACCAACCAAATAAACAAAAGCCTTCCCAATTTTTCTAAAACATTTAAGTCTTGCTTCTCCCCGTCCCTCTTTGTTTTCTTTCCTAACACATCCTCCTTGAAGGCAAAGAGCTGTATGTAAATTAGGTGGCTCTTCTTTGACGGACATGCAGATCAATGCAGGGCATCTCTATTTATTTGCAG
Seq C2 exon
GCATACCACTGACTCCAACAGAACCAGCGTTAGTGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.267
Domain overlap (PFAM):
C1:
PF0182612=TIL=FE(49.1=100)
A:
NA
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]