HsaINT0021659 @ hg38
Intron Retention
Gene
ENSG00000177025 | C19orf18
Description
chromosome 19 open reading frame 18 [Source:HGNC Symbol;Acc:HGNC:28642]
Coordinates
chr19:57972463-57974203:-
Coord C1 exon
chr19:57974099-57974203
Coord A exon
chr19:57972505-57974098
Coord C2 exon
chr19:57972463-57972504
Length
1594 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CCCCTTTGATGGCCTTTTAGCTG
3' ss Score
6.93
Exon sequences
Seq C1 exon
GCAGTAAACGGTCACAACCACCCAGAAACATCACCAAAGAGCCCAAAGTGTTCTTTCATAAAACCCAGTTGCCTGGGATTCAAGGGGCTGCCTCGAGATCCACGG
Seq A exon
GTGAGTCATTGAATTCCTCATTCAGTGGAGTGAGAATCGTAGCCTGGAGTCCTCTTATCTGCCATGTGAATGTGTACTGTGTGCTTGCTGGTAGAAAGGTCCATAAAATAGAGTATAATTAGATAAACATTTGCTTGGAAATTAGATCTTATGCTCTTCACTCTCTGTTAACTGCTTTCTCTTTAGGGATTGCCACTTTCTTCTCTTTTTCATTTCACTTTAATAAGCGCACACAAAAACCTTGATCCCATCCAGATTACACAGGTATGCCTGTCTGACTTGAATTTGGTGCACATTTGGCAGTAGAGCATGCAAGTCTAGACACAGAAGGTTTGTGAGTGTACAGAATTCTTTTTTTTCTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCACCTCCTGGGTTCACACCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCAAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCAGCCGAGAATTCTTTATAAGCATTTTCTATGGTTCCCTTCTAATTTGAGTACTAGAGGATGTTTGTTTATCTTATAACAGCAAAACCAACCCCGACAATCTTTGAAGCTCAGCAACCCTTTGTGGAGATATATGATGCTTGTAAATAATCTCCATTCCATGCAAGGGAAATGCTGTCTGTGTGATACATTTGCATGTAATTTGTGTCCGAGGAAAGGACACTATTGTTGGTTCCCTGGCCTCTCTGCCTGGCTCTCTGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCACCCAGCTGGAGTGCAGTGGCGCAATCTCGGCTCACCACAACCTCCACCGCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCGTGCCACCATGCCCAGCTAATTTTTGTATTTTCAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCTTCCTCGCTGGGATTACAGGCATGAGCCACTGTGCCCAACCCTTGCTGACCTTCTAATGAGGTCGTAGCCCCTTCAACTCTAAGTCTCTCCAGGTCCTTAATTTGGGCAGAGATTTCCCAACTTGTATGACTGCAAAAGGAGACCAGAAACCAAAAGTATCCTGTTCCTAAAGGTCATTCTTCATGACAGGAAGCACCAGGTGCAAAAAGAACAGCAGGCTCACCAGGCTTCTGCAAATTAACCCACACATTGCTGCCAGGCATTGGGAGGAATGTATTAACACATCCCATCTTAGATATTTGGAAGCTGTGTGTTCGGCGTCCTTCTCTAATGCTAAGTTATTTCCTTGTTTTCCCAAGTTCATCTTAAACCATCTTAAAGTCTCTTCTTTTTGATCCCCTTTGATGGCCTTTTAG
Seq C2 exon
CTGCATCCCCTACGAACCCCATGAAATTCCTGAGGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177025:ENST00000314391:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.311
Domain overlap (PFAM):
C1:
PF097165=ETRAMP=FE(27.3=100)
A:
NA
C2:
PF097165=ETRAMP=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development