HsaEX0009926 @ hg38
Exon Skipping
Gene
ENSG00000177025 | C19orf18
Description
chromosome 19 open reading frame 18 [Source:HGNC Symbol;Acc:HGNC:28642]
Coordinates
chr19:57966530-57974203:-
Coord C1 exon
chr19:57974099-57974203
Coord A exon
chr19:57972463-57972504
Coord C2 exon
chr19:57966530-57966632
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTGATGGCCTTTTAGCTG
3' ss Score
6.93
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCAGTAAACGGTCACAACCACCCAGAAACATCACCAAAGAGCCCAAAGTGTTCTTTCATAAAACCCAGTTGCCTGGGATTCAAGGGGCTGCCTCGAGATCCACGG
Seq A exon
CTGCATCCCCTACGAACCCCATGAAATTCCTGAGGAATAAAG
Seq C2 exon
CAATAATTCGGCATAGACCTGCTCTTGTTAAAGTAATTTTAATTTCGAGCGTAGCCTTCAGCATTGCCCTGATATGTGGGATGGCAATCTCCTATATGATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177025-'4-6,'4-3,5-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.311 C2=0.000
Domain overlap (PFAM):
C1:
PF097165=ETRAMP=FE(27.3=100)
A:
PF097165=ETRAMP=FE(10.9=100)
C2:
PF097165=ETRAMP=FE(26.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAAAGAGCCCAAAGTGT
R:
GCTGAAGGCTACGCTCGAAAT
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development